Detailed information NTG0549749

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: J5D23_RS00210
• Genome accession: NZ_CP071987
• Coordinates: 39074..40063 (+)
• Length: 329 a.a.
• NCBI ID: WP_209613998.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5136
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34074..45063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D23_RS00180 (J5D23_00180)	panD	35480..35833 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D23_RS00185 (J5D23_00185)	-	35836..36138 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D23_RS00190 (J5D23_00190)	-	36138..37142 (+)	1005	WP_209554406.1	PDZ domain-containing protein	-
J5D23_RS00195 (J5D23_00195)	comB6	37150..38205 (+)	1056	WP_209554404.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D23_RS00200 (J5D23_00200)	comB7	38221..38334 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D23_RS00205 (J5D23_00205)	comB8	38331..39074 (+)	744	WP_209613997.1	virB8 family protein	Machinery gene
J5D23_RS00210 (J5D23_00210)	comB9	39074..40063 (+)	990	WP_209613998.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D23_RS00215 (J5D23_00215)	comB10	40056..41192 (+)	1137	WP_209613999.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D23_RS00220 (J5D23_00220)	-	41262..42680 (+)	1419	WP_209614000.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D23_RS00225 (J5D23_00225)	gmd	42690..43835 (+)	1146	WP_187863261.1	GDP-mannose 4,6-dehydratase	-
J5D23_RS00230 (J5D23_00230)	-	43828..44760 (+)	933	WP_209614001.1	GDP-L-fucose synthase	-
J5D23_RS07835	-	44791..44966 (-)	176	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 38173.90 Da
• Isoelectric Point: 9.3525

>NTDB_id=549749 J5D23_RS00210 WP_209613998.1 39074..40063(+) (comB9) [Helicobacter pylori strain MT5136]
MRKVLYGVLWAFCWFFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAM
ATLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDK
NYYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEEAIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYC
LWACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCI
RFVKRSKGE

Nucleotide

• Length: 990 bp

>NTDB_id=549749 J5D23_RS00210 WP_209613998.1 39074..40063(+) (comB9) [Helicobacter pylori strain MT5136]
ATGCGTAAGGTTTTATATGGGGTTTTGTGGGCTTTTTGTTGGTTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGA
AGCGAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAA
ACCGCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATG
GCGACCTTATTGTTCTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGA
GAGTAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTA
AGATTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAA
AACTATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCA
AAAAAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGGCGATAATTATTGGCGATAACA
CCAACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTATGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAA
ATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGACTATTTGTGTATC
CGTTTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (63-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.274	100	0.903