Detailed information NTG0549746

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D23_RS00195
• Genome accession: NZ_CP071987
• Coordinates: 37150..38205 (+)
• Length: 351 a.a.
• NCBI ID: WP_209554404.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5136
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32150..43205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D23_RS00165 (J5D23_00165)	-	32572..32985 (+)	414	WP_001023005.1	universal stress protein	-
J5D23_RS00170 (J5D23_00170)	-	32987..33262 (+)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
J5D23_RS00175 (J5D23_00175)	-	33262..35490 (+)	2229	WP_001978629.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D23_RS00180 (J5D23_00180)	panD	35480..35833 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D23_RS00185 (J5D23_00185)	-	35836..36138 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D23_RS00190 (J5D23_00190)	-	36138..37142 (+)	1005	WP_209554406.1	PDZ domain-containing protein	-
J5D23_RS00195 (J5D23_00195)	comB6	37150..38205 (+)	1056	WP_209554404.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D23_RS00200 (J5D23_00200)	comB7	38221..38334 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D23_RS00205 (J5D23_00205)	comB8	38331..39074 (+)	744	WP_209613997.1	virB8 family protein	Machinery gene
J5D23_RS00210 (J5D23_00210)	comB9	39074..40063 (+)	990	WP_209613998.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D23_RS00215 (J5D23_00215)	comB10	40056..41192 (+)	1137	WP_209613999.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D23_RS00220 (J5D23_00220)	-	41262..42680 (+)	1419	WP_209614000.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39659.54 Da
• Isoelectric Point: 8.8283

>NTDB_id=549746 J5D23_RS00195 WP_209554404.1 37150..38205(+) (comB6) [Helicobacter pylori strain MT5136]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQHTTTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549746 J5D23_RS00195 WP_209554404.1 37150..38205(+) (comB6) [Helicobacter pylori strain MT5136]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGTGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAACCTCACTCAAAGCGCTTTGCAATCTTTGCAACATACCA
CAACCTCGCCCGCTCCTTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.162	100	0.932