Detailed information NTG0549712

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D26_RS00215
• Genome accession: NZ_CP071985
• Coordinates: 39869..41005 (+)
• Length: 378 a.a.
• NCBI ID: WP_209508800.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5119
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34869..46005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D26_RS00180 (J5D26_00180)	panD	35296..35649 (+)	354	WP_000142241.1	aspartate 1-decarboxylase	-
J5D26_RS00185 (J5D26_00185)	-	35652..35954 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D26_RS00190 (J5D26_00190)	-	35954..36958 (+)	1005	WP_209509161.1	PDZ domain-containing protein	-
J5D26_RS00195 (J5D26_00195)	comB6	36966..38021 (+)	1056	WP_209509160.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D26_RS00200 (J5D26_00200)	comB7	38037..38150 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D26_RS00205 (J5D26_00205)	comB8	38147..38890 (+)	744	WP_209508798.1	virB8 family protein	Machinery gene
J5D26_RS00210 (J5D26_00210)	comB9	38890..39876 (+)	987	WP_209508799.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D26_RS00215 (J5D26_00215)	comB10	39869..41005 (+)	1137	WP_209508800.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D26_RS00220 (J5D26_00220)	-	41075..42487 (+)	1413	WP_209508801.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D26_RS00225 (J5D26_00225)	gmd	42532..43677 (+)	1146	WP_209508802.1	GDP-mannose 4,6-dehydratase	-
J5D26_RS00230 (J5D26_00230)	-	43670..44602 (+)	933	WP_001002485.1	GDP-L-fucose synthase	-
J5D26_RS00235 (J5D26_00235)	-	44950..45237 (-)	288	WP_249936889.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42293.89 Da
• Isoelectric Point: 9.7473

>NTDB_id=549712 J5D26_RS00215 WP_209508800.1 39869..41005(+) (comB10) [Helicobacter pylori strain MT5119]
MNKWIKGAIVFIGGFATIMTISLIYHQKPKAPSNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=549712 J5D26_RS00215 WP_209508800.1 39869..41005(+) (comB10) [Helicobacter pylori strain MT5119]
GTGAATAAGTGGATTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCTCCCTCAAATAACCAACCCAATCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96