Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   J5D26_RS00205 Genome accession   NZ_CP071985
Coordinates   38147..38890 (+) Length   247 a.a.
NCBI ID   WP_209508798.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33147..43890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS00180 (J5D26_00180) panD 35296..35649 (+) 354 WP_000142241.1 aspartate 1-decarboxylase -
  J5D26_RS00185 (J5D26_00185) - 35652..35954 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D26_RS00190 (J5D26_00190) - 35954..36958 (+) 1005 WP_209509161.1 PDZ domain-containing protein -
  J5D26_RS00195 (J5D26_00195) comB6 36966..38021 (+) 1056 WP_209509160.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D26_RS00200 (J5D26_00200) comB7 38037..38150 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D26_RS00205 (J5D26_00205) comB8 38147..38890 (+) 744 WP_209508798.1 virB8 family protein Machinery gene
  J5D26_RS00210 (J5D26_00210) comB9 38890..39876 (+) 987 WP_209508799.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D26_RS00215 (J5D26_00215) comB10 39869..41005 (+) 1137 WP_209508800.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D26_RS00220 (J5D26_00220) - 41075..42487 (+) 1413 WP_209508801.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D26_RS00225 (J5D26_00225) gmd 42532..43677 (+) 1146 WP_209508802.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28633.90 Da        Isoelectric Point: 8.9604

>NTDB_id=549710 J5D26_RS00205 WP_209508798.1 38147..38890(+) (comB8) [Helicobacter pylori strain MT5119]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDAPDFDYASMPKNPTGFKVTRYSITEI
APINRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=549710 J5D26_RS00205 WP_209508798.1 38147..38890(+) (comB8) [Helicobacter pylori strain MT5119]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAGGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGCTATTTGTTTG
ACGCCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
GCGCCGATTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955