Detailed information NTG0549708

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D26_RS00195
• Genome accession: NZ_CP071985
• Coordinates: 36966..38021 (+)
• Length: 351 a.a.
• NCBI ID: WP_209509160.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5119
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31966..43021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D26_RS00165 (J5D26_00165)	-	32388..32801 (+)	414	WP_209508795.1	universal stress protein	-
J5D26_RS00170 (J5D26_00170)	-	32803..33066 (+)	264	WP_209508796.1	ATP-dependent Clp protease adaptor ClpS	-
J5D26_RS00175 (J5D26_00175)	-	33078..35306 (+)	2229	WP_209508797.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D26_RS00180 (J5D26_00180)	panD	35296..35649 (+)	354	WP_000142241.1	aspartate 1-decarboxylase	-
J5D26_RS00185 (J5D26_00185)	-	35652..35954 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D26_RS00190 (J5D26_00190)	-	35954..36958 (+)	1005	WP_209509161.1	PDZ domain-containing protein	-
J5D26_RS00195 (J5D26_00195)	comB6	36966..38021 (+)	1056	WP_209509160.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D26_RS00200 (J5D26_00200)	comB7	38037..38150 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D26_RS00205 (J5D26_00205)	comB8	38147..38890 (+)	744	WP_209508798.1	virB8 family protein	Machinery gene
J5D26_RS00210 (J5D26_00210)	comB9	38890..39876 (+)	987	WP_209508799.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D26_RS00215 (J5D26_00215)	comB10	39869..41005 (+)	1137	WP_209508800.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D26_RS00220 (J5D26_00220)	-	41075..42487 (+)	1413	WP_209508801.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39804.73 Da
• Isoelectric Point: 8.8155

>NTDB_id=549708 J5D26_RS00195 WP_209509160.1 36966..38021(+) (comB6) [Helicobacter pylori strain MT5119]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGVLFLAFGFFKNWRSVVVICLKKCFALGFYKPFLLLVGFLNMSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549708 J5D26_RS00195 WP_209509160.1 36966..38021(+) (comB6) [Helicobacter pylori strain MT5119]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTCATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCACGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGTGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGTT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAAACTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACATGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.023	100	0.92