Detailed information NTG0549711

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: J5D26_RS00210
• Genome accession: NZ_CP071985
• Coordinates: 38890..39876 (+)
• Length: 328 a.a.
• NCBI ID: WP_209508799.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5119
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33890..44876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D26_RS00180 (J5D26_00180)	panD	35296..35649 (+)	354	WP_000142241.1	aspartate 1-decarboxylase	-
J5D26_RS00185 (J5D26_00185)	-	35652..35954 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D26_RS00190 (J5D26_00190)	-	35954..36958 (+)	1005	WP_209509161.1	PDZ domain-containing protein	-
J5D26_RS00195 (J5D26_00195)	comB6	36966..38021 (+)	1056	WP_209509160.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D26_RS00200 (J5D26_00200)	comB7	38037..38150 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D26_RS00205 (J5D26_00205)	comB8	38147..38890 (+)	744	WP_209508798.1	virB8 family protein	Machinery gene
J5D26_RS00210 (J5D26_00210)	comB9	38890..39876 (+)	987	WP_209508799.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D26_RS00215 (J5D26_00215)	comB10	39869..41005 (+)	1137	WP_209508800.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D26_RS00220 (J5D26_00220)	-	41075..42487 (+)	1413	WP_209508801.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D26_RS00225 (J5D26_00225)	gmd	42532..43677 (+)	1146	WP_209508802.1	GDP-mannose 4,6-dehydratase	-
J5D26_RS00230 (J5D26_00230)	-	43670..44602 (+)	933	WP_001002485.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37848.64 Da
• Isoelectric Point: 9.5584

>NTDB_id=549711 J5D26_RS00210 WP_209508799.1 38890..39876(+) (comB9) [Helicobacter pylori strain MT5119]
MRKVLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFPKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKTPEEEAIMIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FIKRSKGE

Nucleotide

• Length: 987 bp

>NTDB_id=549711 J5D26_RS00210 WP_209508799.1 38890..39876(+) (comB9) [Helicobacter pylori strain MT5119]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGTTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTCCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGCGATAATGATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGACTATCTGTGTATCCGT
TTTATCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.159	100	0.912