Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   J5D21_RS00215 Genome accession   NZ_CP071982
Coordinates   39575..40711 (+) Length   378 a.a.
NCBI ID   WP_209611842.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34575..45711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS00180 (J5D21_00180) panD 35017..35370 (+) 354 WP_000142286.1 aspartate 1-decarboxylase -
  J5D21_RS00185 (J5D21_00185) - 35373..35675 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D21_RS00190 (J5D21_00190) - 35675..36679 (+) 1005 WP_209612455.1 PDZ domain-containing protein -
  J5D21_RS00195 (J5D21_00195) comB6 36687..37742 (+) 1056 WP_209612453.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D21_RS00200 (J5D21_00200) comB7 37758..37871 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D21_RS00205 (J5D21_00205) comB8 37868..38611 (+) 744 WP_209611838.1 type IV secretion system protein Machinery gene
  J5D21_RS00210 (J5D21_00210) comB9 38611..39582 (+) 972 WP_209611840.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D21_RS00215 (J5D21_00215) comB10 39575..40711 (+) 1137 WP_209611842.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D21_RS00220 (J5D21_00220) - 40781..42193 (+) 1413 WP_209611844.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D21_RS00225 (J5D21_00225) gmd 42234..43379 (+) 1146 WP_021186674.1 GDP-mannose 4,6-dehydratase -
  J5D21_RS00230 (J5D21_00230) - 43372..44304 (+) 933 WP_001002471.1 GDP-L-fucose synthase family protein -
  J5D21_RS07675 - 44332..44514 (-) 183 Protein_40 anthranilate synthase component I -
  J5D21_RS07955 - 44694..44987 (-) 294 WP_001940810.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42227.77 Da        Isoelectric Point: 9.7473

>NTDB_id=549670 J5D21_RS00215 WP_209611842.1 39575..40711(+) (comB10) [Helicobacter pylori strain MT5135]
MNKWIKGAVVFVGGFITIITISLIYHQKPKAPSNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKANTPPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=549670 J5D21_RS00215 WP_209611842.1 39575..40711(+) (comB10) [Helicobacter pylori strain MT5135]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTATAACGATTATAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCTCCCTCAAATAACCAACCCAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACGATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAGC
AAACACACCCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTCTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

94.709

100

0.947