Detailed information NTG0549669

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: J5D21_RS00210
• Genome accession: NZ_CP071982
• Coordinates: 38611..39582 (+)
• Length: 323 a.a.
• NCBI ID: WP_209611840.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5135
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33611..44582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D21_RS00180 (J5D21_00180)	panD	35017..35370 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D21_RS00185 (J5D21_00185)	-	35373..35675 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D21_RS00190 (J5D21_00190)	-	35675..36679 (+)	1005	WP_209612455.1	PDZ domain-containing protein	-
J5D21_RS00195 (J5D21_00195)	comB6	36687..37742 (+)	1056	WP_209612453.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D21_RS00200 (J5D21_00200)	comB7	37758..37871 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D21_RS00205 (J5D21_00205)	comB8	37868..38611 (+)	744	WP_209611838.1	type IV secretion system protein	Machinery gene
J5D21_RS00210 (J5D21_00210)	comB9	38611..39582 (+)	972	WP_209611840.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D21_RS00215 (J5D21_00215)	comB10	39575..40711 (+)	1137	WP_209611842.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D21_RS00220 (J5D21_00220)	-	40781..42193 (+)	1413	WP_209611844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D21_RS00225 (J5D21_00225)	gmd	42234..43379 (+)	1146	WP_021186674.1	GDP-mannose 4,6-dehydratase	-
J5D21_RS00230 (J5D21_00230)	-	43372..44304 (+)	933	WP_001002471.1	GDP-L-fucose synthase family protein	-
J5D21_RS07675	-	44332..44514 (-)	183	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 37221.91 Da
• Isoelectric Point: 9.7234

>NTDB_id=549669 J5D21_RS00210 WP_209611840.1 38611..39582(+) (comB9) [Helicobacter pylori strain MT5135]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAPKNNHKPLKEEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWACSK
KSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKRS
KGE

Nucleotide

• Length: 972 bp

>NTDB_id=549669 J5D21_RS00210 WP_209611840.1 38611..39582(+) (comB9) [Helicobacter pylori strain MT5135]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACTTATAAAATCCGTTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TACTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCAAA
AAATAACCACAAGCCCTTAAAAGAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGAAAATCG
TTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCTAAA
AAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAGATTAGC
GCTCTCTAAATTCCCAGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGATTGTGGGCGATTATA
TTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGATTATCTGTGTATCCGTTTTGTCAAAAGGAGC
AAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.793	100	0.935