Detailed information NTG0549666

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D21_RS00195
• Genome accession: NZ_CP071982
• Coordinates: 36687..37742 (+)
• Length: 351 a.a.
• NCBI ID: WP_209612453.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5135
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31687..42742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D21_RS00165 (J5D21_00165)	-	32109..32522 (+)	414	WP_001023008.1	universal stress protein	-
J5D21_RS00170 (J5D21_00170)	-	32524..32799 (+)	276	WP_021172686.1	ATP-dependent Clp protease adaptor ClpS	-
J5D21_RS00175 (J5D21_00175)	-	32799..35027 (+)	2229	WP_021172687.1	AAA family ATPase	-
J5D21_RS00180 (J5D21_00180)	panD	35017..35370 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
J5D21_RS00185 (J5D21_00185)	-	35373..35675 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D21_RS00190 (J5D21_00190)	-	35675..36679 (+)	1005	WP_209612455.1	PDZ domain-containing protein	-
J5D21_RS00195 (J5D21_00195)	comB6	36687..37742 (+)	1056	WP_209612453.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D21_RS00200 (J5D21_00200)	comB7	37758..37871 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D21_RS00205 (J5D21_00205)	comB8	37868..38611 (+)	744	WP_209611838.1	type IV secretion system protein	Machinery gene
J5D21_RS00210 (J5D21_00210)	comB9	38611..39582 (+)	972	WP_209611840.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D21_RS00215 (J5D21_00215)	comB10	39575..40711 (+)	1137	WP_209611842.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D21_RS00220 (J5D21_00220)	-	40781..42193 (+)	1413	WP_209611844.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39718.62 Da
• Isoelectric Point: 8.8155

>NTDB_id=549666 J5D21_RS00195 WP_209612453.1 36687..37742(+) (comB6) [Helicobacter pylori strain MT5135]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSTSALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPALSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549666 J5D21_RS00195 WP_209612453.1 36687..37742(+) (comB6) [Helicobacter pylori strain MT5135]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCACTAGCGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATATTCAATCATGGTTTTTATGCCCTTAGTT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGTGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGATTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCTTTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.732	100	0.937