Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   J5D21_RS00205 Genome accession   NZ_CP071982
Coordinates   37868..38611 (+) Length   247 a.a.
NCBI ID   WP_209611838.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32868..43611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS00180 (J5D21_00180) panD 35017..35370 (+) 354 WP_000142286.1 aspartate 1-decarboxylase -
  J5D21_RS00185 (J5D21_00185) - 35373..35675 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D21_RS00190 (J5D21_00190) - 35675..36679 (+) 1005 WP_209612455.1 PDZ domain-containing protein -
  J5D21_RS00195 (J5D21_00195) comB6 36687..37742 (+) 1056 WP_209612453.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D21_RS00200 (J5D21_00200) comB7 37758..37871 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D21_RS00205 (J5D21_00205) comB8 37868..38611 (+) 744 WP_209611838.1 type IV secretion system protein Machinery gene
  J5D21_RS00210 (J5D21_00210) comB9 38611..39582 (+) 972 WP_209611840.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D21_RS00215 (J5D21_00215) comB10 39575..40711 (+) 1137 WP_209611842.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D21_RS00220 (J5D21_00220) - 40781..42193 (+) 1413 WP_209611844.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D21_RS00225 (J5D21_00225) gmd 42234..43379 (+) 1146 WP_021186674.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28738.95 Da        Isoelectric Point: 8.9604

>NTDB_id=549668 J5D21_RS00205 WP_209611838.1 37868..38611(+) (comB8) [Helicobacter pylori strain MT5135]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=549668 J5D21_RS00205 WP_209611838.1 37868..38611(+) (comB8) [Helicobacter pylori strain MT5135]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTCACGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955