Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   J5D24_RS00215 Genome accession   NZ_CP071978
Coordinates   39920..41056 (+) Length   378 a.a.
NCBI ID   WP_097708208.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34920..46056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS00180 (J5D24_00180) panD 35347..35700 (+) 354 WP_000142253.1 aspartate 1-decarboxylase -
  J5D24_RS00185 (J5D24_00185) - 35703..36005 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D24_RS00190 (J5D24_00190) - 36005..37009 (+) 1005 WP_097708211.1 PDZ domain-containing protein -
  J5D24_RS00195 (J5D24_00195) comB6 37017..38072 (+) 1056 WP_209508200.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D24_RS00200 (J5D24_00200) comB7 38088..38201 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D24_RS00205 (J5D24_00205) comB8 38198..38941 (+) 744 WP_097708210.1 virB8 family protein Machinery gene
  J5D24_RS00210 (J5D24_00210) comB9 38941..39927 (+) 987 WP_209507919.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D24_RS00215 (J5D24_00215) comB10 39920..41056 (+) 1137 WP_097708208.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D24_RS00220 (J5D24_00220) - 41126..42538 (+) 1413 WP_097708207.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D24_RS00225 (J5D24_00225) gmd 42579..43724 (+) 1146 WP_097708206.1 GDP-mannose 4,6-dehydratase -
  J5D24_RS00230 (J5D24_00230) - 43717..44649 (+) 933 WP_001002471.1 GDP-L-fucose synthase -
  J5D24_RS08310 - 45041..45334 (-) 294 WP_097708205.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42138.65 Da        Isoelectric Point: 9.7760

>NTDB_id=549626 J5D24_RS00215 WP_097708208.1 39920..41056(+) (comB10) [Helicobacter pylori strain MT5125]
MNKWLKGAIVFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHAKEETFTSPPMDPKINTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=549626 J5D24_RS00215 WP_097708208.1 39920..41056(+) (comB10) [Helicobacter pylori strain MT5125]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAACTCCAAAGAAATGAACCATGCCAAAGAGGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGAAAGGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.296

100

0.963