Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   J5D24_RS00205 Genome accession   NZ_CP071978
Coordinates   38198..38941 (+) Length   247 a.a.
NCBI ID   WP_097708210.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33198..43941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS00180 (J5D24_00180) panD 35347..35700 (+) 354 WP_000142253.1 aspartate 1-decarboxylase -
  J5D24_RS00185 (J5D24_00185) - 35703..36005 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  J5D24_RS00190 (J5D24_00190) - 36005..37009 (+) 1005 WP_097708211.1 PDZ domain-containing protein -
  J5D24_RS00195 (J5D24_00195) comB6 37017..38072 (+) 1056 WP_209508200.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D24_RS00200 (J5D24_00200) comB7 38088..38201 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D24_RS00205 (J5D24_00205) comB8 38198..38941 (+) 744 WP_097708210.1 virB8 family protein Machinery gene
  J5D24_RS00210 (J5D24_00210) comB9 38941..39927 (+) 987 WP_209507919.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D24_RS00215 (J5D24_00215) comB10 39920..41056 (+) 1137 WP_097708208.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5D24_RS00220 (J5D24_00220) - 41126..42538 (+) 1413 WP_097708207.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D24_RS00225 (J5D24_00225) gmd 42579..43724 (+) 1146 WP_097708206.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28681.95 Da        Isoelectric Point: 8.9891

>NTDB_id=549624 J5D24_RS00205 WP_097708210.1 38198..38941(+) (comB8) [Helicobacter pylori strain MT5125]
MKEKPFNSDQMAFLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APISRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=549624 J5D24_RS00205 WP_097708210.1 38198..38941(+) (comB8) [Helicobacter pylori strain MT5125]
ATGAAAGAAAAGCCTTTCAATAGCGATCAGATGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATTTAC
GTGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGATTAGTAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

94.332

100

0.943