Detailed information NTG0549625

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: J5D24_RS00210
• Genome accession: NZ_CP071978
• Coordinates: 38941..39927 (+)
• Length: 328 a.a.
• NCBI ID: WP_209507919.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33941..44927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS00180 (J5D24_00180)	panD	35347..35700 (+)	354	WP_000142253.1	aspartate 1-decarboxylase	-
J5D24_RS00185 (J5D24_00185)	-	35703..36005 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D24_RS00190 (J5D24_00190)	-	36005..37009 (+)	1005	WP_097708211.1	PDZ domain-containing protein	-
J5D24_RS00195 (J5D24_00195)	comB6	37017..38072 (+)	1056	WP_209508200.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D24_RS00200 (J5D24_00200)	comB7	38088..38201 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D24_RS00205 (J5D24_00205)	comB8	38198..38941 (+)	744	WP_097708210.1	virB8 family protein	Machinery gene
J5D24_RS00210 (J5D24_00210)	comB9	38941..39927 (+)	987	WP_209507919.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D24_RS00215 (J5D24_00215)	comB10	39920..41056 (+)	1137	WP_097708208.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D24_RS00220 (J5D24_00220)	-	41126..42538 (+)	1413	WP_097708207.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
J5D24_RS00225 (J5D24_00225)	gmd	42579..43724 (+)	1146	WP_097708206.1	GDP-mannose 4,6-dehydratase	-
J5D24_RS00230 (J5D24_00230)	-	43717..44649 (+)	933	WP_001002471.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37907.68 Da
• Isoelectric Point: 9.4539

>NTDB_id=549625 J5D24_RS00210 WP_209507919.1 38941..39927(+) (comB9) [Helicobacter pylori strain MT5125]
MRKVLYALMGFLLAFSVLKADDFLEEANETAPVHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENKENMAENAPKDAQKNNKPLKEEKEETKTPEEEVITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRGKDE

Nucleotide

• Length: 987 bp

>NTDB_id=549625 J5D24_RS00210 WP_209507919.1 38941..39927(+) (comB9) [Helicobacter pylori strain MT5125]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGTGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAACCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGTGATAACTATTGGCGATAACACCA
ATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTATGTATCCGT
TTTGTCAAAAGGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.683	100	0.927