Detailed information NTG0549622

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D24_RS00195
• Genome accession: NZ_CP071978
• Coordinates: 37017..38072 (+)
• Length: 351 a.a.
• NCBI ID: WP_209508200.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32017..43072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS00165 (J5D24_00165)	-	32439..32852 (+)	414	WP_001023005.1	universal stress protein	-
J5D24_RS00170 (J5D24_00170)	-	32854..33129 (+)	276	WP_000781793.1	ATP-dependent Clp protease adaptor ClpS	-
J5D24_RS00175 (J5D24_00175)	-	33129..35357 (+)	2229	WP_209507917.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D24_RS00180 (J5D24_00180)	panD	35347..35700 (+)	354	WP_000142253.1	aspartate 1-decarboxylase	-
J5D24_RS00185 (J5D24_00185)	-	35703..36005 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
J5D24_RS00190 (J5D24_00190)	-	36005..37009 (+)	1005	WP_097708211.1	PDZ domain-containing protein	-
J5D24_RS00195 (J5D24_00195)	comB6	37017..38072 (+)	1056	WP_209508200.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D24_RS00200 (J5D24_00200)	comB7	38088..38201 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D24_RS00205 (J5D24_00205)	comB8	38198..38941 (+)	744	WP_097708210.1	virB8 family protein	Machinery gene
J5D24_RS00210 (J5D24_00210)	comB9	38941..39927 (+)	987	WP_209507919.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D24_RS00215 (J5D24_00215)	comB10	39920..41056 (+)	1137	WP_097708208.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D24_RS00220 (J5D24_00220)	-	41126..42538 (+)	1413	WP_097708207.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39712.62 Da
• Isoelectric Point: 8.8155

>NTDB_id=549622 J5D24_RS00195 WP_209508200.1 37017..38072(+) (comB6) [Helicobacter pylori strain MT5125]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549622 J5D24_RS00195 WP_209508200.1 37017..38072(+) (comB6) [Helicobacter pylori strain MT5125]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTTACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCACGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGTCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.447	100	0.934