Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J5N61_RS15295 Genome accession   NZ_CP071973
Coordinates   3192866..3193606 (-) Length   246 a.a.
NCBI ID   WP_004964600.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3187866..3198606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS15275 (J5N61_15275) aroB 3188456..3189538 (-) 1083 WP_004964593.1 3-dehydroquinate synthase -
  J5N61_RS15280 (J5N61_15280) aroK 3189559..3190119 (-) 561 WP_004909618.1 shikimate kinase AroK -
  J5N61_RS15285 (J5N61_15285) pilQ 3190139..3192277 (-) 2139 WP_212388905.1 type IV pilus secretin PilQ family protein Machinery gene
  J5N61_RS15290 (J5N61_15290) pilP 3192339..3192866 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  J5N61_RS15295 (J5N61_15295) pilO 3192866..3193606 (-) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  J5N61_RS15300 (J5N61_15300) pilN 3193603..3194247 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  J5N61_RS15305 (J5N61_15305) pilM 3194247..3195305 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  J5N61_RS15310 (J5N61_15310) ponA 3195468..3198047 (+) 2580 WP_212387533.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27803.38 Da        Isoelectric Point: 4.6374

>NTDB_id=549563 J5N61_RS15295 WP_004964600.1 3192866..3193606(-) (pilO) [Acinetobacter junii strain INC8271]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASEDKTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=549563 J5N61_RS15295 WP_004964600.1 3192866..3193606(-) (pilO) [Acinetobacter junii strain INC8271]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAACTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAGAATATTCGCTTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCTGCACTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCTTCAGAAGATAAGACGAAGAAGTCAGATATTCCTGTTGTGAATTATTCTGTTAAAGCCA
AAACCTACCGTTATGTGGGGGCTGATGATGCAGCAAACACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.47

100

0.728
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683