Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J5N61_RS15285 Genome accession   NZ_CP071973
Coordinates   3190139..3192277 (-) Length   712 a.a.
NCBI ID   WP_212388905.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185139..3197277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS15270 (J5N61_15270) - 3187561..3188439 (-) 879 WP_005403326.1 hypothetical protein -
  J5N61_RS15275 (J5N61_15275) aroB 3188456..3189538 (-) 1083 WP_004964593.1 3-dehydroquinate synthase -
  J5N61_RS15280 (J5N61_15280) aroK 3189559..3190119 (-) 561 WP_004909618.1 shikimate kinase AroK -
  J5N61_RS15285 (J5N61_15285) pilQ 3190139..3192277 (-) 2139 WP_212388905.1 type IV pilus secretin PilQ family protein Machinery gene
  J5N61_RS15290 (J5N61_15290) pilP 3192339..3192866 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  J5N61_RS15295 (J5N61_15295) pilO 3192866..3193606 (-) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  J5N61_RS15300 (J5N61_15300) pilN 3193603..3194247 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  J5N61_RS15305 (J5N61_15305) pilM 3194247..3195305 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77174.52 Da        Isoelectric Point: 5.7118

>NTDB_id=549561 J5N61_RS15285 WP_212388905.1 3190139..3192277(-) (pilQ) [Acinetobacter junii strain INC8271]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLITNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAVAQSVKLSPLQTEYIQLSYAKAADIEKLITQGKNSIANGNRNQGGGDPLGDS
VGSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDL
LVGGSDTTLWNLREPTADSETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVSTPK
VLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNT
IDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=549561 J5N61_RS15285 WP_212388905.1 3190139..3192277(-) (pilQ) [Acinetobacter junii strain INC8271]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATCGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTTATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACATCCATT
CCTGTTTCAACCAATGAAGCAAGTTCAATCAATGTGGCTGCAGATGATCAGCGTGCGCGTTTGATCGTGAATCTAAAGGA
TTCAGGTGCATTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTGAAAATAAATTCAGCAAAACCAACATTAATCACTA
ATCCTACGGTCGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAACGAGGAAATCAAGGTGAAGGACTA
GTTGTTATCGATTTATTGGGGGGTAATACACCAGTAGATGTGCAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAACACTAATGATTTTGCGACCCCCGTAGCAAGTATTGATGCTTATA
ACGATAAAGGAAATGGGGTTATTACTATTCAGTCTGCAGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTGAAACGACCAGAAGACAAGTCACCGAATAAAGCTAAACCACAGACCTATACTGGAAATAAAATTTCATT
AGATTTCCAAGATATTGAAGTCCGCCGTGTTTTGCAGTTATTAGCAGACTTTACAGGAATCAATATGGTTGCCGCTGATA
CTGTACAAGGAAATATTACGCTACGTCTTAAAGACGTTCCTTGGGATCAGGCGCTTGATATCGTTTTAAAAACAAAAAAT
CTAGATAAGCGTCGTAATGGAAATGTAATTTGGATCGCACCTGTTACGGAGCTGATCAAAGCGGAAGAGGATGAGGCGAA
AGCAGTCGCTCAAAGTGTGAAACTTTCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCAGCAGATATTG
AAAAACTCATCACTCAAGGTAAAAATAGCATAGCTAATGGTAATCGCAATCAGGGGGGGGGTGATCCTTTAGGAGATAGC
GTAGGTAGTTTATTAAGCCCGCGCGGAACGGTTTCGATTGATCCACGTACAAATACGTTGATTATAAATGATACATCTCA
AAAGATTGATCAAATCCGTAAGATGATTGACTTGCTCGATGTATCAGTGAAGCAAGTGATGATTGAAGCACGTATTGTGC
GTGCGAGTACCGACTTTACCAAAGAGATGGGAGTGAAATGGGGGATATTGTCTCAAGGTATAGCATCTAATAATGATTTG
CTTGTTGGTGGTAGTGATACAACTTTATGGAATTTACGAGAACCTACAGCTGATAGTGAAACTGGTGGTTGGAAATATGA
TATTGAGCGTCCAGATAATCTGAATGTGAATTTAGGTGCTGTGACACCTGGAGCAAGTCGTATTGCTTTTGGTTTAATTA
GTCTTTCAGATTTTATGTTGGACCTAGAGTTGTCGGCTGTTCAGGCTGATGGTTATGGTGAAGTAGTCTCAACTCCGAAA
GTTCTAACCGCAGATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAAATTCCTTATTCATCTTCTACGGGTGGTGGAGC
TAATGCTGTTCCAAAAACTGAATTTATTGATGCGACCTTAAGTTTGGATGTTACACCAAGTATTACCCCTGAGGGTAAGG
TGATGATGAAATTAAACATCACCAAAGACTCACCAGGAACACCAACACCTACAGGTCAGTTGACGATTAATAAAAACACA
ATTGATACGAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATCTTCGAGCAAGAAAATATTAATTCTCA
GACCAAAGTTCCATTCTTGGGTGATTTACCTTATGTTGGGAAATTATTCCGCAGAGAGTCTAAACAAGACAATAAACGCG
AGTTGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.172

100

0.765
  pilQ Acinetobacter baumannii strain A118

75.172

100

0.765
  comQ Acinetobacter baylyi ADP1

73.464

100

0.739
  pilQ Pseudomonas aeruginosa PAK

41.439

97.612

0.404
  pilQ Legionella pneumophila strain ERS1305867

39.028

95.365

0.372
  pilQ Legionella pneumophila strain Lp02

38.848

95.084

0.369