Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J5N61_RS15290 Genome accession   NZ_CP071973
Coordinates   3192339..3192866 (-) Length   175 a.a.
NCBI ID   WP_004909624.1    Uniprot ID   S7WVB7
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3187339..3197866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS15270 (J5N61_15270) - 3187561..3188439 (-) 879 WP_005403326.1 hypothetical protein -
  J5N61_RS15275 (J5N61_15275) aroB 3188456..3189538 (-) 1083 WP_004964593.1 3-dehydroquinate synthase -
  J5N61_RS15280 (J5N61_15280) aroK 3189559..3190119 (-) 561 WP_004909618.1 shikimate kinase AroK -
  J5N61_RS15285 (J5N61_15285) pilQ 3190139..3192277 (-) 2139 WP_212388905.1 type IV pilus secretin PilQ family protein Machinery gene
  J5N61_RS15290 (J5N61_15290) pilP 3192339..3192866 (-) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  J5N61_RS15295 (J5N61_15295) pilO 3192866..3193606 (-) 741 WP_004964600.1 type 4a pilus biogenesis protein PilO Machinery gene
  J5N61_RS15300 (J5N61_15300) pilN 3193603..3194247 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  J5N61_RS15305 (J5N61_15305) pilM 3194247..3195305 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19460.68 Da        Isoelectric Point: 9.3195

>NTDB_id=549562 J5N61_RS15290 WP_004909624.1 3192339..3192866(-) (pilP) [Acinetobacter junii strain INC8271]
MNNYKLLFSFMAGLVLVGCDSKIDAVNQKMAEIRNEPALPIEPAPVFSPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTNETIALIQTPDRQIERVQVGNYLGMNQGRVVKISPTQIDLVEIVPDGRDG
YVERPRTLVLIGMAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=549562 J5N61_RS15290 WP_004909624.1 3192339..3192866(-) (pilP) [Acinetobacter junii strain INC8271]
ATGAATAATTATAAATTATTATTTAGTTTTATGGCTGGGCTTGTTTTGGTTGGGTGTGATTCAAAAATTGACGCCGTAAA
CCAAAAAATGGCTGAAATTCGGAACGAACCTGCTTTACCTATTGAGCCAGCACCGGTATTTAGCCCTGTACCATTATTTA
ACTATTCAGCACATCAATTGAAAAGTCCATTTATGCCAAGCTCATTGGCGGCTGAGTTAAAGATAATGGCGGGTAAACGC
GTTTATCCAAATTTCAATCGTCAACCGCAACCACTGGAAAGTTATGCGTTGGAATCCCTAAATATGAAGGGTAGCATGCG
TGGTAAAACCAATGAAACGATAGCACTGATTCAGACCCCTGATCGACAAATTGAGCGGGTGCAGGTTGGAAACTACTTAG
GAATGAATCAAGGTCGAGTGGTAAAAATTAGTCCGACTCAGATTGATTTGGTGGAAATTGTACCAGATGGGCGTGATGGT
TATGTGGAGAGACCAAGAACGCTCGTTCTAATTGGTATGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

79.532

97.714

0.777
  comL Acinetobacter baylyi ADP1

70.286

100

0.703