Detailed information NTG0549522

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: J4048_RS17715
• Genome accession: NZ_CP071970
• Coordinates: 3626960..3628123 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain XJ5
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3621960..3633123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4048_RS17685 (J4048_17685)	-	3622225..3622644 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
J4048_RS17690 (J4048_17690)	comFC	3622718..3623407 (-)	690	WP_197093073.1	phosphoribosyltransferase family protein	Machinery gene
J4048_RS17695 (J4048_17695)	-	3623413..3623697 (-)	285	WP_003151389.1	competence protein ComFB	-
J4048_RS17700 (J4048_17700)	comFA	3623755..3625140 (-)	1386	WP_033575221.1	DEAD/DEAH box helicase	Machinery gene
J4048_RS17705 (J4048_17705)	-	3625248..3626096 (-)	849	WP_015418336.1	DegV family protein	-
J4048_RS17710 (J4048_17710)	degU	3626194..3626883 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
J4048_RS17715 (J4048_17715)	degS	3626960..3628123 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
J4048_RS17720 (J4048_17720)	-	3628346..3628993 (+)	648	WP_003151384.1	YigZ family protein	-
J4048_RS17725 (J4048_17725)	-	3628998..3630212 (+)	1215	WP_033575220.1	LCP family protein	-
J4048_RS17730 (J4048_17730)	-	3630302..3631378 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
J4048_RS17735 (J4048_17735)	-	3631511..3632707 (-)	1197	WP_015418338.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=549522 J4048_RS17715 WP_007407484.1 3626960..3628123(-) (degS) [Bacillus amyloliquefaciens strain XJ5]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=549522 J4048_RS17715 WP_007407484.1 3626960..3628123(-) (degS) [Bacillus amyloliquefaciens strain XJ5]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951