Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   J4048_RS17700 Genome accession   NZ_CP071970
Coordinates   3623755..3625140 (-) Length   461 a.a.
NCBI ID   WP_033575221.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3618755..3630140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS17665 (J4048_17665) flgL 3618930..3619847 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  J4048_RS17670 (J4048_17670) flgK 3619859..3621376 (-) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  J4048_RS17675 (J4048_17675) - 3621392..3621874 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J4048_RS17680 (J4048_17680) flgM 3621889..3622155 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J4048_RS17685 (J4048_17685) - 3622225..3622644 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J4048_RS17690 (J4048_17690) comFC 3622718..3623407 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  J4048_RS17695 (J4048_17695) - 3623413..3623697 (-) 285 WP_003151389.1 competence protein ComFB -
  J4048_RS17700 (J4048_17700) comFA 3623755..3625140 (-) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  J4048_RS17705 (J4048_17705) - 3625248..3626096 (-) 849 WP_015418336.1 DegV family protein -
  J4048_RS17710 (J4048_17710) degU 3626194..3626883 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J4048_RS17715 (J4048_17715) degS 3626960..3628123 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J4048_RS17720 (J4048_17720) - 3628346..3628993 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52529.97 Da        Isoelectric Point: 10.0818

>NTDB_id=549520 J4048_RS17700 WP_033575221.1 3623755..3625140(-) (comFA) [Bacillus amyloliquefaciens strain XJ5]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTLPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=549520 J4048_RS17700 WP_033575221.1 3623755..3625140(-) (comFA) [Bacillus amyloliquefaciens strain XJ5]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCTTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629