Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J4048_RS17710 Genome accession   NZ_CP071970
Coordinates   3626194..3626883 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3621194..3631883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS17675 (J4048_17675) - 3621392..3621874 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J4048_RS17680 (J4048_17680) flgM 3621889..3622155 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J4048_RS17685 (J4048_17685) - 3622225..3622644 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J4048_RS17690 (J4048_17690) comFC 3622718..3623407 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  J4048_RS17695 (J4048_17695) - 3623413..3623697 (-) 285 WP_003151389.1 competence protein ComFB -
  J4048_RS17700 (J4048_17700) comFA 3623755..3625140 (-) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  J4048_RS17705 (J4048_17705) - 3625248..3626096 (-) 849 WP_015418336.1 DegV family protein -
  J4048_RS17710 (J4048_17710) degU 3626194..3626883 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J4048_RS17715 (J4048_17715) degS 3626960..3628123 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J4048_RS17720 (J4048_17720) - 3628346..3628993 (+) 648 WP_003151384.1 YigZ family protein -
  J4048_RS17725 (J4048_17725) - 3628998..3630212 (+) 1215 WP_033575220.1 LCP family protein -
  J4048_RS17730 (J4048_17730) - 3630302..3631378 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=549521 J4048_RS17710 WP_003219701.1 3626194..3626883(-) (degU) [Bacillus amyloliquefaciens strain XJ5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=549521 J4048_RS17710 WP_003219701.1 3626194..3626883(-) (degU) [Bacillus amyloliquefaciens strain XJ5]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1