Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   J4048_RS17690 Genome accession   NZ_CP071970
Coordinates   3622718..3623407 (-) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3617718..3628407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS17655 (J4048_17655) fliW 3617809..3618240 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  J4048_RS17660 (J4048_17660) - 3618270..3618839 (-) 570 WP_033575224.1 DUF6470 family protein -
  J4048_RS17665 (J4048_17665) flgL 3618930..3619847 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  J4048_RS17670 (J4048_17670) flgK 3619859..3621376 (-) 1518 WP_033575223.1 flagellar hook-associated protein FlgK -
  J4048_RS17675 (J4048_17675) - 3621392..3621874 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J4048_RS17680 (J4048_17680) flgM 3621889..3622155 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J4048_RS17685 (J4048_17685) - 3622225..3622644 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  J4048_RS17690 (J4048_17690) comFC 3622718..3623407 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  J4048_RS17695 (J4048_17695) - 3623413..3623697 (-) 285 WP_003151389.1 competence protein ComFB -
  J4048_RS17700 (J4048_17700) comFA 3623755..3625140 (-) 1386 WP_033575221.1 DEAD/DEAH box helicase Machinery gene
  J4048_RS17705 (J4048_17705) - 3625248..3626096 (-) 849 WP_015418336.1 DegV family protein -
  J4048_RS17710 (J4048_17710) degU 3626194..3626883 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J4048_RS17715 (J4048_17715) degS 3626960..3628123 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=549519 J4048_RS17690 WP_197093073.1 3622718..3623407(-) (comFC) [Bacillus amyloliquefaciens strain XJ5]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=549519 J4048_RS17690 WP_197093073.1 3622718..3623407(-) (comFC) [Bacillus amyloliquefaciens strain XJ5]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598