Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J5J84_RS18015 Genome accession   NZ_CP071957
Coordinates   3885224..3885742 (-) Length   172 a.a.
NCBI ID   WP_063692165.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain JLAF9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3880224..3890742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5J84_RS17985 (J5J84_17980) - 3880272..3880805 (+) 534 WP_081251504.1 Chromate resistance protein ChrB -
  J5J84_RS17990 (J5J84_17985) - 3880789..3882015 (+) 1227 WP_252606597.1 MFS transporter -
  J5J84_RS17995 (J5J84_17990) - 3882056..3882442 (-) 387 WP_009461960.1 RidA family protein -
  J5J84_RS18000 (J5J84_17995) - 3882500..3883474 (-) 975 WP_086061467.1 tripartite tricarboxylate transporter substrate binding protein -
  J5J84_RS18005 (J5J84_18000) - 3883486..3884403 (-) 918 WP_252605730.1 fumarylacetoacetate hydrolase family protein -
  J5J84_RS18010 (J5J84_18005) - 3884418..3885077 (-) 660 WP_042485360.1 GntR family transcriptional regulator -
  J5J84_RS18015 (J5J84_18010) ssb 3885224..3885742 (-) 519 WP_063692165.1 single-stranded DNA-binding protein Machinery gene
  J5J84_RS18020 (J5J84_18015) - 3886002..3887213 (-) 1212 WP_252605731.1 MFS transporter -
  J5J84_RS18025 (J5J84_18020) uvrA 3887325..3890288 (+) 2964 WP_252606598.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18873.89 Da        Isoelectric Point: 5.3412

>NTDB_id=549419 J5J84_RS18015 WP_063692165.1 3885224..3885742(-) (ssb) [Alcaligenes faecalis strain JLAF9]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMS
DNLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=549419 J5J84_RS18015 WP_063692165.1 3885224..3885742(-) (ssb) [Alcaligenes faecalis strain JLAF9]
ATGGCATCGGTAAATAAAGTCATTCTGGTCGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCTGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTTTGGCTGAAATTGCAGGTGAGTACCTGCGTAAAGGCCGTCCCGTCTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGTCAGGACGGTCAGGAGCGTTTCACGACCGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGGTGCAC
CTGCGCCGCAACGGGCTCAGCGTCCAGCGCCTCAACAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCG
GACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.053

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.535
  ssb Neisseria meningitidis MC58

47.802

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.506