Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GLO7428_RS05520 Genome accession   NC_019745
Coordinates   1239479..1239844 (-) Length   121 a.a.
NCBI ID   WP_015187576.1    Uniprot ID   K9XAL6
Organism   Gloeocapsa sp. PCC 7428     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234479..1244844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLO7428_RS05505 (Glo7428_1124) - 1235422..1236243 (-) 822 WP_015187573.1 Hpt domain-containing protein -
  GLO7428_RS05510 (Glo7428_1125) pilJ 1236326..1238908 (-) 2583 WP_015187574.1 methyl-accepting chemotaxis protein Machinery gene
  GLO7428_RS05515 (Glo7428_1126) - 1238933..1239469 (-) 537 WP_015187575.1 chemotaxis protein CheW -
  GLO7428_RS05520 (Glo7428_1127) pilH 1239479..1239844 (-) 366 WP_015187576.1 response regulator transcription factor Machinery gene
  GLO7428_RS05525 (Glo7428_1128) hmpF 1240432..1242144 (+) 1713 WP_015187577.1 pilus motility taxis protein HmpF -
  GLO7428_RS05530 (Glo7428_1129) tilS 1242192..1243193 (-) 1002 WP_015187578.1 tRNA lysidine(34) synthetase TilS -
  GLO7428_RS05535 (Glo7428_1130) ccsB 1243213..1244256 (-) 1044 WP_015187579.1 c-type cytochrome biogenesis protein CcsB -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13544.76 Da        Isoelectric Point: 6.4514

>NTDB_id=54909 GLO7428_RS05520 WP_015187576.1 1239479..1239844(-) (pilH) [Gloeocapsa sp. PCC 7428]
MATVLVVEDSPTQREIIIQLLQKSGLQVTVAHDGVEALEQIQVSCPSIVVLDVVMPRMNGYELCRKLKTDPKTQNVRVIM
CSTKGEEFDRHWGMKQGADAYIVKPFQSNEFLGTVKQLLQG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54909 GLO7428_RS05520 WP_015187576.1 1239479..1239844(-) (pilH) [Gloeocapsa sp. PCC 7428]
ATGGCAACAGTTTTAGTTGTGGAAGATAGTCCCACGCAAAGGGAAATTATCATACAACTCTTACAAAAAAGTGGTTTACA
AGTTACCGTAGCCCATGATGGAGTTGAAGCCTTAGAGCAAATTCAAGTATCTTGTCCATCGATTGTTGTACTTGATGTTG
TCATGCCACGCATGAATGGTTATGAGCTTTGCCGTAAGTTAAAAACAGATCCAAAAACTCAAAATGTACGAGTAATCATG
TGTTCTACAAAAGGAGAAGAATTTGATCGTCATTGGGGAATGAAACAAGGTGCAGATGCATATATTGTTAAACCCTTTCA
ATCAAATGAATTTTTAGGAACAGTGAAACAACTGCTGCAAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9XAL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.5

99.174

0.669
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372

Multiple sequence alignment