Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   GLO7428_RS05510 Genome accession   NC_019745
Coordinates   1236326..1238908 (-) Length   860 a.a.
NCBI ID   WP_015187574.1    Uniprot ID   K9XB26
Organism   Gloeocapsa sp. PCC 7428     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231326..1243908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLO7428_RS28835 (Glo7428_1123) - 1232102..1235194 (-) 3093 WP_015187572.1 hybrid sensor histidine kinase/response regulator -
  GLO7428_RS05505 (Glo7428_1124) - 1235422..1236243 (-) 822 WP_015187573.1 Hpt domain-containing protein -
  GLO7428_RS05510 (Glo7428_1125) pilJ 1236326..1238908 (-) 2583 WP_015187574.1 methyl-accepting chemotaxis protein Machinery gene
  GLO7428_RS05515 (Glo7428_1126) - 1238933..1239469 (-) 537 WP_015187575.1 chemotaxis protein CheW -
  GLO7428_RS05520 (Glo7428_1127) pilH 1239479..1239844 (-) 366 WP_015187576.1 response regulator transcription factor Machinery gene
  GLO7428_RS05525 (Glo7428_1128) hmpF 1240432..1242144 (+) 1713 WP_015187577.1 pilus motility taxis protein HmpF -
  GLO7428_RS05530 (Glo7428_1129) tilS 1242192..1243193 (-) 1002 WP_015187578.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 860 a.a.        Molecular weight: 93240.68 Da        Isoelectric Point: 4.1924

>NTDB_id=54908 GLO7428_RS05510 WP_015187574.1 1236326..1238908(-) (pilJ) [Gloeocapsa sp. PCC 7428]
MTLSINQDQEYQEAQKAYIQGNYEAAAAILERLLQEFPDDPNSHLLRGHIYCVHQQYAQAQAEYRTVIELTEDTDLIDCA
NEALESIGQYESAQQASHYTNSEKEFEDTYLLMDVANDAVTPFNHQQPEDNELAAFEEFNPSSFDFEHFDYNTPSLSEVE
SPFQDAFSSASGDRAQEATSIEAFVDPFALAQAEVPSSIGRTKLQDEDLPSNSDFFATTAATEHSKADFSKSVATETSEI
EDTFGYPASQQQQVEEVEDQTLLLSPTKLQVEEAESPSAEDPTIEDTFGSKVPVNNFIQDEHPTAGHAASTSIQEFSIAE
FDAFDDLGSVPEFEHSATEVAPQDTNGGDVILGDLASEVAATPTANESVLPHTDNASVPPSTHAQGWRKHFENASLEKKQ
WLTASSVGVVSAVVVAALSLSSSFLTPVPNRAAVRNTGWMLAAAAGIAGFATTRFLGQITTKQIKRTTADLYLQFDALRE
GNFTPQPAAQDELGQLVAKFNEMAHVIQATTSEAQHKARQQEEEKENLQRQVMRLLDDVEGAARGDLTVRAEVSADVMGA
VADSFNLTIQSLREIVQQVKIAAKQVSKSATDSETFAQSLSSEALRQAEELAVTLNSVQVMTEGIQRVAESAREAELVAR
SASTTALKGGEAVERTVAGISEIRQTVAETTRKVKRLAESSQEISKIVALISQIASRTNLLALNASIEAARAGEAGRGFA
IVADEVRQLADRVAKALREIEQIVKQIQSETGSVMTAMEEGTQQVIQGTHLAEQAKRSLEDIVQVSNRIDTLVGSITAET
VAQTDTSVAVASVMQSVELTAQANSQEAQRVSGSLKNLVKVAGDLLNSVERFRVETTESN

Nucleotide


Download         Length: 2583 bp        

>NTDB_id=54908 GLO7428_RS05510 WP_015187574.1 1236326..1238908(-) (pilJ) [Gloeocapsa sp. PCC 7428]
ATGACATTAAGTATCAATCAAGATCAGGAATACCAAGAGGCACAAAAAGCCTATATTCAAGGCAACTACGAAGCAGCAGC
CGCAATTTTGGAACGATTACTTCAAGAGTTTCCTGACGATCCAAATAGTCATCTATTACGGGGACATATTTACTGCGTAC
ATCAACAATATGCCCAAGCACAAGCAGAGTATCGCACCGTTATCGAGCTTACAGAAGATACAGATTTGATTGATTGCGCA
AACGAGGCGCTCGAATCGATTGGTCAATACGAAAGCGCACAGCAAGCAAGTCACTATACAAATTCTGAAAAAGAGTTTGA
AGACACTTATCTGTTGATGGATGTTGCTAACGACGCTGTAACACCATTTAACCACCAGCAACCTGAAGATAACGAACTTG
CTGCCTTTGAAGAATTCAACCCTAGCAGCTTTGATTTTGAGCATTTTGACTACAACACACCATCGCTTTCAGAAGTTGAG
TCGCCGTTTCAAGACGCTTTTAGTTCTGCGTCAGGCGATCGCGCGCAGGAAGCAACATCAATCGAGGCGTTTGTCGATCC
TTTTGCTTTGGCTCAAGCCGAAGTCCCGTCGTCAATTGGTAGAACAAAACTACAAGACGAGGATTTACCAAGCAATTCAG
ACTTCTTTGCAACTACCGCAGCAACGGAACACTCAAAGGCGGATTTTTCTAAGTCAGTAGCCACAGAAACCTCTGAAATT
GAAGATACTTTTGGTTATCCAGCCTCACAGCAGCAGCAAGTAGAAGAAGTTGAAGACCAGACATTGCTGTTGTCTCCAAC
AAAGTTGCAAGTAGAAGAAGCCGAATCACCTTCTGCTGAAGATCCAACAATTGAAGATACCTTTGGGTCAAAAGTTCCTG
TCAACAACTTTATACAAGACGAGCATCCGACAGCAGGTCATGCAGCGAGTACATCAATACAGGAATTTTCTATTGCTGAA
TTTGATGCTTTTGATGATTTGGGCAGTGTTCCTGAATTTGAGCATTCAGCAACTGAGGTTGCACCGCAAGACACCAATGG
AGGAGATGTCATTTTAGGCGATTTGGCAAGTGAAGTCGCAGCCACGCCAACTGCGAATGAATCTGTTCTCCCTCACACAG
ATAATGCTTCAGTCCCACCTAGCACTCATGCTCAAGGGTGGCGTAAGCATTTTGAAAACGCCTCTTTAGAGAAAAAACAA
TGGTTAACAGCAAGTAGCGTCGGCGTTGTCTCAGCAGTTGTAGTTGCTGCACTCAGCTTAAGTAGCTCGTTTCTCACCCC
TGTACCGAATAGAGCCGCCGTAAGAAACACTGGTTGGATGCTAGCAGCAGCAGCGGGAATTGCGGGTTTTGCGACTACTC
GGTTTTTGGGACAAATCACAACCAAACAAATCAAACGCACAACCGCAGATCTCTATCTACAGTTTGATGCTCTTAGAGAA
GGTAATTTCACTCCACAACCTGCTGCGCAAGACGAATTAGGTCAACTCGTTGCTAAATTCAACGAAATGGCGCACGTCAT
TCAAGCAACGACAAGTGAAGCGCAGCACAAAGCGCGACAACAGGAGGAAGAGAAAGAAAATTTGCAGCGCCAAGTTATGC
GCTTACTTGATGATGTTGAAGGTGCAGCACGTGGAGATTTAACAGTGCGTGCGGAGGTCAGCGCTGATGTGATGGGTGCT
GTTGCAGACTCGTTCAACTTGACAATTCAAAGCCTGCGTGAAATTGTGCAACAAGTGAAGATTGCCGCGAAGCAGGTGAG
TAAGAGTGCTACCGATAGCGAAACGTTTGCACAAAGCTTATCTTCAGAAGCGTTGCGCCAAGCTGAAGAACTCGCGGTGA
CGCTTAATTCGGTACAGGTGATGACTGAAGGAATTCAACGCGTTGCAGAAAGTGCGCGCGAGGCAGAGTTGGTGGCGCGT
TCGGCTTCAACAACTGCATTGAAAGGAGGAGAAGCGGTAGAAAGAACGGTTGCAGGCATTTCAGAAATTCGCCAAACGGT
TGCAGAAACGACACGTAAAGTTAAGCGCCTTGCTGAATCATCGCAGGAGATTTCCAAAATCGTCGCCTTAATCTCGCAAA
TCGCCTCACGGACAAACTTATTAGCACTTAATGCCAGTATCGAGGCGGCACGGGCGGGCGAAGCTGGACGCGGTTTTGCA
ATTGTAGCCGATGAAGTTCGCCAACTTGCAGACCGTGTTGCTAAAGCATTACGCGAAATTGAACAAATCGTTAAGCAAAT
TCAGAGCGAAACAGGTTCTGTGATGACGGCAATGGAAGAAGGTACGCAACAAGTTATTCAAGGAACGCACCTAGCGGAAC
AAGCTAAGCGATCGCTCGAAGACATTGTGCAAGTTTCTAATCGCATTGATACACTTGTTGGCTCAATTACAGCAGAAACC
GTCGCGCAAACCGATACTTCGGTTGCTGTAGCTTCGGTTATGCAATCTGTAGAATTAACCGCGCAAGCTAATTCGCAAGA
AGCGCAGCGTGTTTCTGGATCTTTGAAAAATCTTGTGAAAGTCGCAGGCGATCTACTGAACTCAGTTGAACGGTTCCGTG
TAGAAACAACAGAATCGAACTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(639-817)

Tetratricopeptide repeat (TPR_19)

(18-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9XB26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

44.672

100

0.483

Multiple sequence alignment