Detailed information NTG0548902

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LRO88_RS01895
• Genome accession: NZ_CP089148
• Coordinates: 337895..339016 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NIB353
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 332895..344016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS01870	ycdA	332904..333968 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
LRO88_RS01875	-	333969..334121 (-)	153	WP_021481864.1	hypothetical protein	-
LRO88_RS01880	ycdB	334295..335713 (+)	1419	WP_129092915.1	YcdB/YcdC domain-containing protein	-
LRO88_RS01885	ycdC	335900..337261 (+)	1362	WP_046160119.1	YcdB/YcdC domain-containing protein	-
LRO88_RS01890	cwlK	337269..337772 (-)	504	WP_046160022.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
LRO88_RS01895	rapF	337895..339016 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
LRO88_RS01900	ycdF	339125..339901 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
LRO88_RS01905	ycdG	339926..341611 (+)	1686	WP_046160023.1	glycoside hydrolase family 13 protein	-
LRO88_RS01910	znuA	341799..342758 (+)	960	WP_029317219.1	metal ABC transporter substrate-binding protein	-
LRO88_RS01915	znuC	342813..343508 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=548902 LRO88_RS01895 WP_003234740.1 337895..339016(+) (rapF) [Bacillus subtilis strain NIB353]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=548902 LRO88_RS01895 WP_003234740.1 337895..339016(+) (rapF) [Bacillus subtilis strain NIB353]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCATTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405