Detailed information NTG0548902

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: J4H94_RS17545
• Genome accession: NZ_CP071899
• Coordinates: 3712679..3714016 (+)
• Length: 445 a.a.
• NCBI ID: WP_133455603.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain TPA3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3707679..3719016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4H94_RS17520 (J4H94_17520)	pgeF	3707710..3708447 (-)	738	WP_208216770.1	peptidoglycan editing factor PgeF	-
J4H94_RS17525 (J4H94_17525)	rluD	3708444..3709418 (-)	975	WP_208216771.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
J4H94_RS17530 (J4H94_17530)	-	3709622..3710611 (+)	990	WP_125867018.1	outer membrane protein assembly factor BamD	-
J4H94_RS17535 (J4H94_17535)	-	3710733..3710966 (+)	234	WP_110775887.1	PP0621 family protein	-
J4H94_RS17540 (J4H94_17540)	pilS	3710956..3712551 (+)	1596	WP_133455604.1	ATP-binding protein	Regulator
J4H94_RS17545 (J4H94_17545)	pilR	3712679..3714016 (+)	1338	WP_133455603.1	sigma-54 dependent transcriptional regulator	Regulator
J4H94_RS17550 (J4H94_17550)	-	3714060..3715115 (-)	1056	WP_125867020.1	DUF2333 family protein	-
J4H94_RS17555 (J4H94_17555)	-	3715330..3716925 (+)	1596	WP_133455601.1	PleD family two-component system response regulator	-
J4H94_RS17560 (J4H94_17560)	-	3717036..3718997 (+)	1962	WP_208216772.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49598.98 Da
• Isoelectric Point: 6.2057

>NTDB_id=548902 J4H94_RS17545 WP_133455603.1 3712679..3714016(+) (pilR) [Stutzerimonas frequens strain TPA3]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLDLVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPATESPVDNRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSDKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSSARLHPDALAKLENYRFPGNVRELENMLERAYTLCEDDEIKAGDLRLADSPGLSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=548902 J4H94_RS17545 WP_133455603.1 3712679..3714016(+) (pilR) [Stutzerimonas frequens strain TPA3]
ATGACCGCGCGCCAGAAAGCATTGATCATCGATGACGAGCCCGATATCCGCGAGTTGCTGGAGATCACCCTCGGGCGGAT
GAAGCTCGATACCCGCAGCGCCCGCAACCTCAAGGAAGCGCGCGAGTGCCTGGCACGCGAGCACTATGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAGCGGCTTGGACCTGGTGCAGTACATCCAGCAGCAGCATCCGCAACTGCCGGTGGCG
ATGATCACCGCCTATGGCAGTCTCGACACCGCCATCGGCGCCCTGAAGGCTGGCGCTTTCGATTTTCTGACCAAACCTGT
GGATCTCAACCGCCTTCGCGAACTCGTCAGCACCGCCTTGCGGCTGCGCGCACCGGCGACCGAATCGCCAGTGGACAATC
GCCTGCTAGGCAGTTCGCCGCCGATGAAGGTCCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCGGTCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATTCACGAACAGGGCCCACGCAGCGACAAGCCCTT
CGTGCCGGTCAATTGCGGCGCGATCCCTTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCAGTG
GCGCCATCGAGGACAAACCCGGACTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTACGCGCGGTCGGCGGTGCGCAGGAAGTGATGGT
CGACGTCCGCATCCTCTGTGCCACCCACAAGGATCTGGCCAGCGAAGTGGCCGCAGGCCGCTTCCGCCAGGACCTGTATT
ACCGTCTGAACGTCATCGAACTGCGTGTGCCGCCACTACGCGAGCGCCGTGAAGACATCGGTTTGCTCGCTGATGCCATG
CTGCGCCGGCTGGCACAGGAATGCGGCGACAGCAGCGCCCGGCTGCATCCTGATGCCCTGGCGAAGCTGGAAAACTATCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGGGCCTACACGCTCTGTGAAGACGACGAGATCAAGGCCG
GCGACCTGCGTCTAGCCGACAGCCCGGGCCTGTCGGAGAACGGCGAAGCCAGTCTGGCGCAGATCGATAATCTGGAAGAC
CACCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACCGCGGCCGCCCAGCG
ACTGGGGCTGACCTTTCGCTCGATGCGTTACCGTCTGAAGAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.261	99.775	0.861
pilR	Acinetobacter baumannii strain A118	50.545	100	0.521
luxO	Vibrio cholerae strain A1552	38.479	100	0.387