Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J4H94_RS17540 Genome accession   NZ_CP071899
Coordinates   3710956..3712551 (+) Length   531 a.a.
NCBI ID   WP_133455604.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TPA3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705956..3717551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4H94_RS17520 (J4H94_17520) pgeF 3707710..3708447 (-) 738 WP_208216770.1 peptidoglycan editing factor PgeF -
  J4H94_RS17525 (J4H94_17525) rluD 3708444..3709418 (-) 975 WP_208216771.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J4H94_RS17530 (J4H94_17530) - 3709622..3710611 (+) 990 WP_125867018.1 outer membrane protein assembly factor BamD -
  J4H94_RS17535 (J4H94_17535) - 3710733..3710966 (+) 234 WP_110775887.1 PP0621 family protein -
  J4H94_RS17540 (J4H94_17540) pilS 3710956..3712551 (+) 1596 WP_133455604.1 ATP-binding protein Regulator
  J4H94_RS17545 (J4H94_17545) pilR 3712679..3714016 (+) 1338 WP_133455603.1 sigma-54 dependent transcriptional regulator Regulator
  J4H94_RS17550 (J4H94_17550) - 3714060..3715115 (-) 1056 WP_125867020.1 DUF2333 family protein -
  J4H94_RS17555 (J4H94_17555) - 3715330..3716925 (+) 1596 WP_133455601.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58911.96 Da        Isoelectric Point: 8.1622

>NTDB_id=548901 J4H94_RS17540 WP_133455604.1 3710956..3712551(+) (pilS) [Stutzerimonas frequens strain TPA3]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLSPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=548901 J4H94_RS17540 WP_133455604.1 3710956..3712551(+) (pilS) [Stutzerimonas frequens strain TPA3]
GTGGGCACTGAAAACCTCGCTTTTCTCGGCGATCAGGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCACTGGTACTGCTGATAAGCAGTGATCTGCACAATGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCCGTCGCGATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTTGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTTTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTCGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGAGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAATCGCTGACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGTGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATCGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGGCTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
TCGCCTGGCGCAGATCATTCAGGACCACTCTCGGCGCATGAACCTGGTCATCGAGAACGTCCTGCAACTCTCGCGGCGCC
GACAGGCCGAGCCACAGTTGCTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTAACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGTGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGGCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAAAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657