Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4H94_RS03510 Genome accession   NZ_CP071899
Coordinates   758229..758720 (+) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas frequens strain TPA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 753229..763720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4H94_RS03500 (J4H94_03500) uvrA 753724..756561 (-) 2838 WP_208217464.1 excinuclease ABC subunit UvrA -
  J4H94_RS03505 (J4H94_03505) - 756693..758060 (+) 1368 WP_208217465.1 MFS transporter -
  J4H94_RS03510 (J4H94_03510) ssb 758229..758720 (+) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  J4H94_RS03515 (J4H94_03515) - 758732..759616 (+) 885 WP_102840424.1 sugar nucleotide-binding protein -
  J4H94_RS03520 (J4H94_03520) - 759609..760538 (+) 930 WP_208217466.1 NAD-dependent epimerase/dehydratase family protein -
  J4H94_RS03525 (J4H94_03525) - 760608..761291 (-) 684 WP_208217467.1 OmpW family outer membrane protein -
  J4H94_RS03530 (J4H94_03530) - 761475..762260 (+) 786 WP_045159139.1 DUF3450 domain-containing protein -
  J4H94_RS03535 (J4H94_03535) - 762257..763603 (+) 1347 WP_208217468.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=548884 J4H94_RS03510 WP_003281797.1 758229..758720(+) (ssb) [Stutzerimonas frequens strain TPA3]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=548884 J4H94_RS03510 WP_003281797.1 758229..758720(+) (ssb) [Stutzerimonas frequens strain TPA3]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATTGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCACCACGTCAGCCGCGCCCGCAGCGTGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503