Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J4I02_RS25330 Genome accession   NZ_CP071875
Coordinates   5443239..5443730 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus polymyxa strain SF05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5438239..5448730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4I02_RS25310 (J4I02_24980) opp4C 5438716..5439639 (-) 924 WP_029518954.1 oligopeptide ABC transporter permease -
  J4I02_RS25315 (J4I02_24985) - 5439651..5440613 (-) 963 WP_274483362.1 ABC transporter permease -
  J4I02_RS25320 (J4I02_24990) - 5440682..5442421 (-) 1740 WP_274483363.1 ABC transporter substrate-binding protein -
  J4I02_RS25325 (J4I02_24995) rpsR 5442945..5443217 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  J4I02_RS25330 (J4I02_25000) ssbA 5443239..5443730 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  J4I02_RS25335 (J4I02_25005) rpsF 5443780..5444064 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  J4I02_RS25340 (J4I02_25010) - 5444383..5444577 (+) 195 WP_013312803.1 YjzC family protein -
  J4I02_RS25345 (J4I02_25015) - 5444944..5445261 (+) 318 WP_013312804.1 hypothetical protein -
  J4I02_RS25355 (J4I02_25025) - 5445671..5445877 (-) 207 WP_043882418.1 DUF951 domain-containing protein -
  J4I02_RS25360 (J4I02_25030) - 5445867..5446817 (-) 951 WP_274483364.1 mechanosensitive ion channel family protein -
  J4I02_RS25365 (J4I02_25035) yyaC 5447093..5447698 (+) 606 WP_104497449.1 spore protease YyaC -
  J4I02_RS25370 (J4I02_25040) - 5447652..5448173 (-) 522 WP_274483366.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=548703 J4I02_RS25330 WP_013312801.1 5443239..5443730(-) (ssbA) [Paenibacillus polymyxa strain SF05]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=548703 J4I02_RS25330 WP_013312801.1 5443239..5443730(-) (ssbA) [Paenibacillus polymyxa strain SF05]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374