Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSP16_RS02570 Genome accession   NZ_CP089067
Coordinates   518173..518538 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513173..523538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS02555 (LSP16_02505) pilK 514517..515392 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  LSP16_RS02560 (LSP16_02510) pilJ 515453..517501 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  LSP16_RS02565 (LSP16_02515) - 517586..518122 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  LSP16_RS02570 (LSP16_02520) pilH 518173..518538 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSP16_RS02575 (LSP16_02525) pilG 518585..518992 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LSP16_RS02580 (LSP16_02530) gshB 519247..520200 (+) 954 WP_014602389.1 glutathione synthase -
  LSP16_RS02585 (LSP16_02535) - 520347..521240 (+) 894 WP_003160914.1 energy transducer TonB -
  LSP16_RS02590 (LSP16_02540) - 521289..521858 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  LSP16_RS02595 (LSP16_02545) ruvX 521858..522292 (+) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  LSP16_RS02600 (LSP16_02550) pyrR 522404..522916 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=548618 LSP16_RS02570 WP_003084587.1 518173..518538(-) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=548618 LSP16_RS02570 WP_003084587.1 518173..518538(-) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364