Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JN057_RS06110 Genome accession   NZ_CP071871
Coordinates   1200238..1201047 (-) Length   269 a.a.
NCBI ID   WP_001289496.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195238..1206047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS06090 (JN057_01258) - 1197583..1198569 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  JN057_RS06095 (JN057_01259) - 1198859..1199602 (-) 744 WP_000725952.1 potassium channel family protein -
  JN057_RS06100 (JN057_01260) - 1199649..1199903 (-) 255 WP_001823540.1 type II toxin-antitoxin system RelE family toxin -
  JN057_RS06105 (JN057_01261) relB 1199905..1200147 (-) 243 WP_012677101.1 type II toxin-antitoxin system RelB family antitoxin -
  JN057_RS06110 (JN057_01262) vicX 1200238..1201047 (-) 810 WP_001289496.1 MBL fold metallo-hydrolase Regulator
  JN057_RS06115 (JN057_01263) micB 1201049..1202398 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JN057_RS06120 (JN057_01264) micA 1202391..1203095 (-) 705 WP_000722076.1 response regulator YycF Regulator
  JN057_RS06125 (JN057_01265) mutY 1203151..1204326 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  JN057_RS11590 - 1204423..1204548 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29902.82 Da        Isoelectric Point: 5.9895

>NTDB_id=548617 JN057_RS06110 WP_001289496.1 1200238..1201047(-) (vicX) [Streptococcus pneumoniae strain BVJ1JL]
MSEIGFKYSILASGSSGNSFYLETSKNKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=548617 JN057_RS06110 WP_001289496.1 1200238..1201047(-) (vicX) [Streptococcus pneumoniae strain BVJ1JL]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
TAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77