Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4T76_RS09150 Genome accession   NZ_CP071867
Coordinates   2035279..2035800 (-) Length   173 a.a.
NCBI ID   WP_267341914.1    Uniprot ID   -
Organism   Gilliamella sp. B3022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2030279..2040800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T76_RS09125 (J4T76_09155) lpxK 2031816..2032829 (+) 1014 WP_267341957.1 tetraacyldisaccharide 4'-kinase -
  J4T76_RS09130 (J4T76_09160) - 2032826..2033011 (+) 186 WP_267341919.1 Trm112 family protein -
  J4T76_RS09135 (J4T76_09165) kdsB 2033032..2033796 (+) 765 WP_267356166.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J4T76_RS09140 (J4T76_09170) - 2033800..2034492 (+) 693 WP_267341916.1 DUF2461 domain-containing protein -
  J4T76_RS09145 (J4T76_09175) - 2034508..2035170 (-) 663 WP_267346233.1 MarC family NAAT transporter -
  J4T76_RS09150 (J4T76_09180) ssb 2035279..2035800 (-) 522 WP_267341914.1 single-stranded DNA-binding protein Machinery gene
  J4T76_RS09155 (J4T76_09185) corA 2036028..2036969 (+) 942 WP_267341913.1 magnesium/cobalt transporter CorA -
  J4T76_RS09160 (J4T76_09190) - 2037164..2038123 (+) 960 WP_267341912.1 glucokinase -
  J4T76_RS09165 (J4T76_09195) - 2038143..2038391 (+) 249 WP_267341911.1 YcgL domain-containing protein -
  J4T76_RS09170 (J4T76_09200) - 2038388..2038810 (+) 423 WP_267341910.1 YcgN family cysteine cluster protein -
  J4T76_RS09175 (J4T76_09205) - 2038850..2039407 (-) 558 WP_267346237.1 YggT family protein -
  J4T76_RS09180 (J4T76_09210) - 2039445..2040146 (-) 702 WP_267341908.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19103.00 Da        Isoelectric Point: 4.9681

>NTDB_id=548563 J4T76_RS09150 WP_267341914.1 2035279..2035800(-) (ssb) [Gilliamella sp. B3022]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSESWRDKQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQSGQDRYTTEVVINPIGGTLQILGSRGNSNDNFDDGSHNWGQSANNMSSAPAASSRQPNQNVPAPQPKA
PEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=548563 J4T76_RS09150 WP_267341914.1 2035279..2035800(-) (ssb) [Gilliamella sp. B3022]
ATGGCAAACCGAGGAATAAATAAAGTCATTTTAGTTGGTAATTTAGGACAAGATCCCGAAGTCCGTTACATGCCAAATGG
AAATGCTGTAGCTAATTTTAGTGTAGCAACCTCAGAATCATGGAGAGATAAACAAACCGGAGAAACCCGTGATCGCACTG
AATGGCATCGAGTTGTCGTTTTTGGTAAATTAGCCGAAATTGCAGGTGAATACATTAAAAAAGGCACTCAAGTTTATCTT
GAAGGACAATTACAAACTCGAAAATGGCAAGACCAATCAGGACAAGATCGTTACACAACGGAAGTAGTAATTAATCCTAT
CGGTGGAACTTTACAAATTCTAGGTTCACGTGGAAATAGTAATGATAATTTTGATGATGGTTCTCATAATTGGGGGCAAA
GTGCTAATAATATGTCATCGGCACCCGCAGCGTCATCTCGTCAACCCAATCAAAATGTACCAGCACCACAACCTAAAGCA
CCTGAACCACCAATGGATTTTGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.341

100

0.624
  ssb Glaesserella parasuis strain SC1401

52.688

100

0.566
  ssb Neisseria meningitidis MC58

49.162

100

0.509
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.509