Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   J4N42_RS05540 Genome accession   NZ_CP071859
Coordinates   1196208..1196795 (+) Length   195 a.a.
NCBI ID   WP_252030403.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191208..1201795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS05520 (J4N42_05520) panP 1191535..1193181 (-) 1647 WP_252030398.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  J4N42_RS05525 (J4N42_05525) - 1193378..1193890 (-) 513 WP_252030399.1 hypothetical protein -
  J4N42_RS05530 (J4N42_05530) - 1193975..1194880 (-) 906 WP_252030400.1 lysine exporter LysO family protein -
  J4N42_RS05535 (J4N42_05535) - 1194905..1195825 (-) 921 WP_252030402.1 HDOD domain-containing protein -
  J4N42_RS05540 (J4N42_05540) tfoX 1196208..1196795 (+) 588 WP_252030403.1 TfoX/Sxy family DNA transformation protein Regulator
  J4N42_RS05545 (J4N42_05545) - 1196906..1197451 (-) 546 WP_252030404.1 hypothetical protein -
  J4N42_RS05550 (J4N42_05550) - 1197612..1198109 (-) 498 WP_252030405.1 response regulator -
  J4N42_RS05555 (J4N42_05555) - 1198102..1200057 (-) 1956 WP_252030407.1 ATP-binding protein -
  J4N42_RS05560 (J4N42_05560) - 1200270..1201532 (+) 1263 WP_252030408.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22393.89 Da        Isoelectric Point: 8.9137

>NTDB_id=548507 J4N42_RS05540 WP_252030403.1 1196208..1196795(+) (tfoX) [Vibrio sp. SCSIO 43135]
MDMTEQIFMDYVGKFGEFQKRSMFGGVGLFKSEAMFALISGEKIFIRGGDNLDTMLNDLGCEKYRHVKKQTTATVNYYDI
TEIFHQQGEALHEIVESSIKLSVDQRKFQKSTANRRLRDLPNMQLTLERMVKKAGIEDVESFMNLGPAEVYSKVRKAYGT
DVDVKLLWKFAGAVEGIHWKLIQEPKKRQLLASCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=548507 J4N42_RS05540 WP_252030403.1 1196208..1196795(+) (tfoX) [Vibrio sp. SCSIO 43135]
ATGGATATGACAGAGCAAATTTTTATGGATTACGTGGGCAAATTTGGTGAGTTCCAAAAGCGCTCAATGTTCGGTGGTGT
AGGCCTTTTCAAGAGTGAGGCAATGTTTGCCTTAATCAGTGGAGAGAAGATCTTTATCCGTGGTGGAGACAACCTAGATA
CAATGTTGAACGATCTAGGCTGTGAAAAATACCGACACGTGAAAAAGCAAACTACAGCAACTGTAAATTACTACGACATT
ACTGAAATTTTTCATCAACAAGGTGAGGCTTTACATGAGATTGTAGAGTCGTCGATTAAACTTTCAGTCGATCAACGAAA
ATTCCAAAAATCTACGGCTAATCGTCGTCTACGTGACTTGCCAAACATGCAACTGACGCTAGAAAGAATGGTGAAGAAAG
CCGGCATCGAAGACGTGGAAAGTTTCATGAACTTAGGTCCTGCGGAAGTCTACTCTAAGGTCCGTAAGGCGTATGGTACT
GACGTTGACGTCAAGCTACTATGGAAATTTGCTGGTGCGGTGGAAGGCATTCACTGGAAACTAATCCAAGAGCCAAAAAA
ACGTCAACTACTAGCAAGTTGTCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

71.503

98.974

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

71.503

98.974

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

71.503

98.974

0.708
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

71.503

98.974

0.708
  tfoX Vibrio cholerae strain A1552

71.503

98.974

0.708
  tfoX Vibrio campbellii strain DS40M4

66.667

100

0.667
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.128

100

0.651
  tfoX Aliivibrio fischeri ES114

56.021

97.949

0.549