Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N37_RS14175 Genome accession   NZ_CP071855
Coordinates   2968970..2969614 (+) Length   214 a.a.
NCBI ID   WP_010450508.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963970..2974614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS14160 (J4N37_14030) - 2964467..2965915 (-) 1449 WP_252041223.1 MSHA biogenesis protein MshI -
  J4N37_RS14165 (J4N37_14035) csrD 2965918..2967933 (-) 2016 WP_252041224.1 RNase E specificity factor CsrD -
  J4N37_RS14170 (J4N37_14040) ssb 2968150..2968692 (-) 543 WP_010450507.1 single-stranded DNA-binding protein Machinery gene
  J4N37_RS14175 (J4N37_14045) qstR 2968970..2969614 (+) 645 WP_010450508.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N37_RS14180 (J4N37_14050) galU 2969714..2970586 (+) 873 WP_045391526.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N37_RS14185 (J4N37_14055) uvrA 2970725..2973547 (+) 2823 WP_252041225.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24727.64 Da        Isoelectric Point: 8.4513

>NTDB_id=548427 J4N37_RS14175 WP_010450508.1 2968970..2969614(+) (qstR) [Vibrio sp. SCSIO 43153]
MRKSAYARKLFLISLKQDESSQLTQLKKYADMDIPLIGIDDLMEANPKHRNKILLIDFEEHKDLILSIKNLPLVWKNFET
IIFNVPKRLTTDELLSFGQLKGLFYKEDSAENIAEGFKEIINGQNWLPRNVTSQLLHYYRNVVSSHTTPATVDLTIRELQ
VLRCLQAGASNCQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=548427 J4N37_RS14175 WP_010450508.1 2968970..2969614(+) (qstR) [Vibrio sp. SCSIO 43153]
ATGAGAAAATCTGCTTATGCGAGAAAACTCTTTCTTATCAGCTTAAAACAAGATGAAAGTTCTCAGCTAACACAGCTGAA
GAAATATGCTGATATGGATATTCCTCTCATTGGTATTGATGACCTTATGGAAGCCAACCCTAAGCACCGCAATAAGATCT
TACTCATTGATTTTGAAGAACACAAAGACTTGATTCTTTCGATTAAGAATCTTCCATTAGTATGGAAGAACTTTGAAACA
ATCATATTTAACGTCCCAAAACGCCTAACAACGGACGAGTTACTCTCGTTCGGCCAGCTAAAAGGACTGTTCTATAAAGA
AGATAGTGCTGAAAATATCGCAGAGGGATTCAAAGAAATCATAAACGGCCAAAACTGGTTGCCTAGGAATGTCACGAGCC
AACTTTTGCACTACTATCGCAATGTCGTCAGCTCCCATACCACTCCAGCAACCGTTGACCTCACCATTCGCGAGTTACAA
GTTTTACGCTGTTTGCAAGCAGGAGCCTCCAATTGCCAGATGGCAGAAGAGTTATTTGTCAGTGAATTCACAATAAAGTC
GCACCTATACCAAATTTTTAAAAAGTTATCCGTCAAAAATCGGGTTCAAGCGATAGCATGGGCAGATCAGAATTTGCTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

82.243

100

0.822
  qstR Vibrio parahaemolyticus RIMD 2210633

81.308

100

0.813
  qstR Vibrio cholerae strain A1552

53.211

100

0.542