Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N37_RS14170 Genome accession   NZ_CP071855
Coordinates   2968150..2968692 (-) Length   180 a.a.
NCBI ID   WP_010450507.1    Uniprot ID   A0A7Y3ZB07
Organism   Vibrio sp. SCSIO 43153     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2953471..2967933 2968150..2968692 flank 217


Gene organization within MGE regions


Location: 2953471..2968692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS14095 (J4N37_13965) - 2953471..2954259 (-) 789 WP_252041214.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4N37_RS14100 (J4N37_13970) - 2954259..2954837 (-) 579 WP_252041216.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4N37_RS14105 (J4N37_13975) - 2954834..2955301 (-) 468 WP_038884602.1 type II secretion system protein -
  J4N37_RS14110 (J4N37_13980) - 2955416..2955640 (-) 225 WP_010450494.1 hypothetical protein -
  J4N37_RS14115 (J4N37_13985) - 2955709..2956191 (-) 483 WP_171358563.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4N37_RS14120 (J4N37_13990) - 2956428..2956889 (-) 462 WP_171358562.1 MSHA biogenesis protein MshF -
  J4N37_RS14125 (J4N37_13995) - 2956893..2958113 (-) 1221 WP_252041218.1 type II secretion system F family protein -
  J4N37_RS14130 (J4N37_14000) - 2958122..2959846 (-) 1725 WP_252041220.1 GspE/PulE family protein -
  J4N37_RS14135 (J4N37_14005) - 2959843..2960940 (-) 1098 WP_252041221.1 tetratricopeptide repeat protein -
  J4N37_RS14140 (J4N37_14010) - 2960925..2961770 (-) 846 WP_045391547.1 AAA family ATPase -
  J4N37_RS14145 (J4N37_14015) mshL 2961807..2963474 (-) 1668 WP_082038786.1 pilus (MSHA type) biogenesis protein MshL -
  J4N37_RS14150 (J4N37_14020) - 2963495..2963827 (-) 333 WP_045391541.1 hypothetical protein -
  J4N37_RS14155 (J4N37_14025) gspM 2963820..2964470 (-) 651 WP_252041222.1 type II secretion system protein GspM -
  J4N37_RS14160 (J4N37_14030) - 2964467..2965915 (-) 1449 WP_252041223.1 MSHA biogenesis protein MshI -
  J4N37_RS14165 (J4N37_14035) csrD 2965918..2967933 (-) 2016 WP_252041224.1 RNase E specificity factor CsrD -
  J4N37_RS14170 (J4N37_14040) ssb 2968150..2968692 (-) 543 WP_010450507.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20044.10 Da        Isoelectric Point: 4.9269

>NTDB_id=548426 J4N37_RS14170 WP_010450507.1 2968150..2968692(-) (ssb) [Vibrio sp. SCSIO 43153]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAP
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=548426 J4N37_RS14170 WP_010450507.1 2968150..2968692(-) (ssb) [Vibrio sp. SCSIO 43153]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTTGGTAACGACCCTGAAATTCGTTACATGCCTAACGG
TGGTGCGGTAGCAAACATCACGATTGCAACTTCAGAGTCATGGCGTGACAAAGCGACTGGTGAACAGCGTGAAAAAACAG
AGTGGCATCGTGTGGCTTTGTTTGGGAAATTGGCTGAAGTAGCTGGTGAGTACCTGCGCAAAGGCTCTCAGGTTTACGTT
GAAGGTCAACTTCAAACACGTAAATGGCAAGACCAAAATGGTCAAGACCGCTACACGACAGAAGTTGTTGTTCAAGGATT
CAACGGCGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGCGCACCGATGGGTGGTGGTCAGCAACAGCAGCAACAAC
AAGGTGGTTGGGGTCAACCTCAGCAACCTGCTCAGCAGCAGTACAATGCTCCACAGCAGCAACCTCAACAACAGGCTCCG
CAGCAACCACAGCAGCAGTACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3ZB07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.806
  ssb Glaesserella parasuis strain SC1401

56.41

100

0.611
  ssb Neisseria meningitidis MC58

47.486

99.444

0.472
  ssb Neisseria gonorrhoeae MS11

47.486

99.444

0.472