Detailed information NTG0548418

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J4N37_RS13140
• Genome accession: NZ_CP071855
• Coordinates: 2772921..2773790 (+)
• Length: 289 a.a.
• NCBI ID: WP_045393848.1
• Uniprot ID: A0AAW6ZZ30
• Organism: Vibrio sp. SCSIO 43153
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2767921..2778790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N37_RS13120 (J4N37_12990)	nadC	2768353..2769240 (+)	888	WP_045393857.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J4N37_RS13125 (J4N37_12995)	-	2769468..2769926 (+)	459	WP_045393855.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J4N37_RS13130 (J4N37_13000)	pilB	2769926..2771611 (+)	1686	WP_010450185.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J4N37_RS13135 (J4N37_13005)	pilC	2771627..2772850 (+)	1224	WP_045393852.1	type II secretion system F family protein	Machinery gene
J4N37_RS13140 (J4N37_13010)	pilD	2772921..2773790 (+)	870	WP_045393848.1	A24 family peptidase	Machinery gene
J4N37_RS13145 (J4N37_13015)	coaE	2773791..2774405 (+)	615	WP_038885728.1	dephospho-CoA kinase	-
J4N37_RS13150 (J4N37_13020)	zapD	2774434..2775174 (+)	741	WP_045393845.1	cell division protein ZapD	-
J4N37_RS13155 (J4N37_13025)	yacG	2775231..2775431 (+)	201	WP_252041145.1	DNA gyrase inhibitor YacG	-
J4N37_RS13160 (J4N37_13030)	rplS	2775802..2776155 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
J4N37_RS13165 (J4N37_13035)	trmD	2776197..2776940 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J4N37_RS13170 (J4N37_13040)	rimM	2776968..2777516 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
J4N37_RS13175 (J4N37_13045)	rpsP	2777544..2777792 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32498.60 Da
• Isoelectric Point: 7.5423

>NTDB_id=548418 J4N37_RS13140 WP_045393848.1 2772921..2773790(+) (pilD) [Vibrio sp. SCSIO 43153]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMDLEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLRGKCHNCQSSISARYPLVELLTAFCSGFIAFHFGFSYFTTALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALVGISPVSLQDAVIGAMAGYLCLWSVYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=548418 J4N37_RS13140 WP_045393848.1 2772921..2773790(+) (pilD) [Vibrio sp. SCSIO 43153]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTTGGTTTGATCGTAGGCAGCTTCCTCAA
CGTTGTTATTTATCGACTACCCAAAATCATGGATCTAGAATGGCGACGCGAGTGCGCTGAGTCATTTCCTGAATACAAGA
TCGAGCCACCAAAAGAGACGTTAACGCTCAGTGTGCCGCGTTCATCTTGTCAGCAATGTGGTACACACATTCGCATCAGA
GACAACATCCCTGTGATTAGTTGGCTATTACTCAGAGGTAAATGCCACAACTGCCAGTCTTCTATTAGTGCTCGCTACCC
TCTTGTCGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCCTTTCATTTCGGTTTTAGCTACTTCACTACGGCCCTTA
TTTTCTTTACCTTTGTACTGATAGCCGCCACATTCATCGACCTAGATACTATGTTGTTGCCGGATCAACTCACGCTGCCA
TTAATGTGGGCAGGTATTGCCCTTGCTCTCGTGGGTATAAGCCCTGTTAGCCTGCAAGACGCCGTTATTGGAGCTATGGC
GGGTTACCTCTGCCTCTGGAGTGTCTACTGGGCATTCAAACTGCTAACTGGCAAAGAAGGTATGGGCTACGGTGATTTTA
AACTACTTGCAGCATTAGGAGCTTGGTTAGGTTGGCAATCTTTGCCGATGATCATTTTGCTTTCATCAGTGGTAGGCGTC
ATCTTTGGTCTTATTCAATTGCGTTTGCAGAAGCAAGGCATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATCGC
GGGTTGGGTAAGCCTAATTTGGGGCAATCAAATCCTTAACTGGTACTTTACGTCAATTCTAGGAGTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	95.156	100	0.952
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	51.46	94.81	0.488
pilD	Acinetobacter nosocomialis M2	50.923	93.772	0.478
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439