Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   J4N45_RS07090 Genome accession   NZ_CP071850
Coordinates   1507850..1508443 (+) Length   197 a.a.
NCBI ID   WP_252014276.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502850..1513443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS07070 (J4N45_07070) panP 1503150..1504793 (-) 1644 WP_252014272.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  J4N45_RS07075 (J4N45_07075) - 1505000..1505515 (-) 516 WP_252014273.1 hypothetical protein -
  J4N45_RS07080 (J4N45_07080) - 1505607..1506512 (-) 906 WP_252014274.1 lysine exporter LysO family protein -
  J4N45_RS07085 (J4N45_07085) - 1506558..1507481 (-) 924 WP_252014275.1 HDOD domain-containing protein -
  J4N45_RS07090 (J4N45_07090) tfoX 1507850..1508443 (+) 594 WP_252014276.1 TfoX/Sxy family DNA transformation protein Regulator
  J4N45_RS07095 (J4N45_07095) - 1508550..1509095 (-) 546 WP_042475437.1 hypothetical protein -
  J4N45_RS07100 (J4N45_07100) - 1509402..1509899 (-) 498 WP_252014277.1 response regulator -
  J4N45_RS07105 (J4N45_07105) - 1509892..1511862 (-) 1971 WP_252014278.1 ATP-binding protein -
  J4N45_RS07110 (J4N45_07110) - 1511973..1513289 (+) 1317 WP_234493890.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22750.12 Da        Isoelectric Point: 9.8205

>NTDB_id=548330 J4N45_RS07090 WP_252014276.1 1507850..1508443(+) (tfoX) [Vibrio sp. SCSIO 43140]
MIEQSFYDYTTQFGESQKRSMFGGTGLFKEGAMYALISNDKVFIRGGKGLDAQLHELQCEKFRHVKKQSTATVNYYDITN
LYNQQAPVLKGLVRQSIENSVDQHCSKNSVENRRLRDLPNMQLTLERMVKKSGIQDVKTFLELGAPRVFNRVKRTYGNDV
DLKLLWKFAGAVDGVHWKLIQDPMKQRLLEHCSKIEQ

Nucleotide


Download         Length: 594 bp        

>NTDB_id=548330 J4N45_RS07090 WP_252014276.1 1507850..1508443(+) (tfoX) [Vibrio sp. SCSIO 43140]
ATGATAGAGCAATCTTTTTACGACTACACGACTCAATTTGGCGAATCGCAAAAACGTTCGATGTTTGGTGGCACTGGGCT
CTTCAAGGAAGGCGCCATGTACGCACTGATCAGTAACGACAAAGTGTTCATCCGCGGTGGAAAAGGACTGGATGCTCAGT
TGCACGAGCTGCAATGCGAGAAATTTCGTCATGTAAAAAAACAATCAACAGCGACGGTAAACTACTACGACATAACGAAT
CTTTACAACCAGCAAGCTCCTGTGCTCAAAGGCTTGGTTAGACAGTCCATTGAAAACTCAGTCGATCAACATTGTAGTAA
GAATTCAGTTGAGAATAGACGATTGAGGGACTTGCCTAACATGCAACTTACATTAGAGCGCATGGTGAAAAAGTCGGGGA
TTCAAGATGTTAAGACGTTCTTAGAGTTAGGAGCACCACGTGTTTTCAATAGAGTGAAACGCACGTACGGCAACGACGTT
GACCTAAAGCTGTTATGGAAGTTTGCGGGTGCCGTTGATGGCGTGCATTGGAAACTGATTCAAGATCCAATGAAACAGAG
ACTTTTGGAGCATTGCTCGAAGATAGAACAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-99)

TfoX C-terminal domain (TfoX_C)

(112-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

63.402

98.477

0.624
  tfoX Vibrio cholerae strain A1552

63.402

98.477

0.624
  tfoX Vibrio parahaemolyticus RIMD 2210633

60.938

97.462

0.594
  tfoX Vibrio campbellii strain DS40M4

59.896

97.462

0.584
  tfoX Aliivibrio fischeri ES114

54.45

96.954

0.528