Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N39_RS13265 Genome accession   NZ_CP071848
Coordinates   2828029..2828577 (-) Length   182 a.a.
NCBI ID   WP_252020289.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2823029..2833577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS13245 (J4N39_13255) - 2823448..2823774 (-) 327 WP_353505598.1 MSHA biogenesis protein MshK -
  J4N39_RS13250 (J4N39_13260) pilO 2823767..2824411 (-) 645 WP_252020285.1 type 4a pilus biogenesis protein PilO -
  J4N39_RS13255 (J4N39_13265) - 2824411..2825847 (-) 1437 WP_252020287.1 MSHA biogenesis protein MshI -
  J4N39_RS13260 (J4N39_13270) csrD 2825863..2827854 (-) 1992 WP_286036810.1 RNase E specificity factor CsrD -
  J4N39_RS13265 (J4N39_13275) ssb 2828029..2828577 (-) 549 WP_252020289.1 single-stranded DNA-binding protein Machinery gene
  J4N39_RS13270 (J4N39_13280) - 2828901..2829530 (+) 630 WP_252020291.1 LuxR C-terminal-related transcriptional regulator -
  J4N39_RS13275 (J4N39_13285) - 2829602..2830564 (+) 963 WP_252020293.1 DHH family phosphoesterase -
  J4N39_RS13280 (J4N39_13290) galU 2830632..2831504 (+) 873 WP_252020295.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19899.07 Da        Isoelectric Point: 5.2157

>NTDB_id=548303 J4N39_RS13265 WP_252020289.1 2828029..2828577(-) (ssb) [Vibrio sp. SCSIO 43136]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGAPAQGGMGGQQQQQGGWGQPQQPVQHAPAQQAPQQQAAPQA
APQPAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=548303 J4N39_RS13265 WP_252020289.1 2828029..2828577(-) (ssb) [Vibrio sp. SCSIO 43136]
ATGGCAAGCCGTGGAATTAACAAAGTAATTTTGGTTGGTAACCTGGGCAATGACCCAGAGATTCGTTACATGCCTAACGG
CGGTGCCGTAGCGAATATCACTATTGCAACGTCAGAAAGCTGGCGTGATAAAGCAACGGGTGAGCAACGTGAAAAAACAG
AATGGCACCGAGTTGCGCTATTTGGCAAGTTAGCAGAAGTGGCTGGTGAGTACCTACGTAAAGGCTCTCAAGTTTACATC
GAAGGTCAGCTTCAAACACGTAAATGGCAAGACCAGTCTGGTCAGGATCGCTACACAACAGAAGTGGTAGTTCAAGGCTT
TAACGGTGTAATGCAAATGCTTGGTGGTCGCCAAGGCGCACCTGCGCAAGGTGGAATGGGTGGTCAACAGCAGCAACAAG
GTGGATGGGGTCAGCCTCAACAGCCTGTTCAGCACGCTCCTGCTCAGCAAGCCCCTCAACAGCAGGCAGCTCCACAAGCA
GCTCCGCAACCGGCACAGCCTCAGTACAATGAGCCGCCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.808
  ssb Glaesserella parasuis strain SC1401

55.155

100

0.588
  ssb Neisseria meningitidis MC58

47.826

100

0.484
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.484