Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N39_RS08960 Genome accession   NZ_CP071848
Coordinates   1906869..1907381 (+) Length   170 a.a.
NCBI ID   WP_252018274.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1901869..1912381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS08920 (J4N39_08930) - 1902063..1902308 (-) 246 WP_252018254.1 Cro/CI family transcriptional regulator -
  J4N39_RS08925 (J4N39_08935) - 1902431..1903024 (+) 594 WP_252018257.1 helix-turn-helix domain-containing protein -
  J4N39_RS08930 (J4N39_08940) - 1903181..1903456 (+) 276 WP_286036789.1 PapB/FocB family fimbrial expression transcriptional regulator -
  J4N39_RS08935 (J4N39_08945) - 1903891..1904238 (+) 348 WP_252018262.1 hypothetical protein -
  J4N39_RS08940 (J4N39_08950) - 1904241..1905161 (+) 921 WP_252018264.1 Rad52/Rad22 family DNA repair protein -
  J4N39_RS08945 (J4N39_08955) - 1905166..1906293 (+) 1128 WP_252018267.1 hypothetical protein -
  J4N39_RS08950 (J4N39_08960) - 1906290..1906526 (+) 237 WP_252018269.1 hypothetical protein -
  J4N39_RS08955 (J4N39_08965) - 1906523..1906840 (+) 318 WP_252018271.1 hypothetical protein -
  J4N39_RS08960 (J4N39_08970) ssb 1906869..1907381 (+) 513 WP_252018274.1 single-stranded DNA-binding protein Machinery gene
  J4N39_RS08965 (J4N39_08975) - 1907397..1907555 (+) 159 WP_252018276.1 hypothetical protein -
  J4N39_RS08970 (J4N39_08980) - 1907566..1907733 (+) 168 WP_252018279.1 hypothetical protein -
  J4N39_RS08975 (J4N39_08985) xisR 1907860..1908090 (+) 231 WP_252018281.1 excisionase family protein -
  J4N39_RS08980 (J4N39_08990) - 1908099..1909349 (+) 1251 WP_252018285.1 DUF3596 domain-containing protein -
  J4N39_RS08985 (J4N39_08995) - 1909354..1911684 (+) 2331 WP_252018287.1 YgiQ family radical SAM protein -
  J4N39_RS08990 (J4N39_09000) - 1911745..1912173 (-) 429 WP_252018289.1 GtrA family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19207.23 Da        Isoelectric Point: 6.7299

>NTDB_id=548292 J4N39_RS08960 WP_252018274.1 1906869..1907381(+) (ssb) [Vibrio sp. SCSIO 43136]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGNRQSQSAPPQGQSHQQQGGWGQPQQPRQPQQSRLQQNHQPQYNEP
PMDFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=548292 J4N39_RS08960 WP_252018274.1 1906869..1907381(+) (ssb) [Vibrio sp. SCSIO 43136]
ATGGCCTCTAGAGGAATCAACAAAGTTATCCTGGTTGGCAACCTAGGAAATGACCCTGAAATTCGCTACATGCCAAACGG
TGGTGCCGTGGCGAATATCACTATTGCTACGTCGGAAAGTTGGCGTGATAAAGCAACTGGTGAGCAACGTGAAAAAACAG
AATGGCACCGTGTTGCGCTATTTGGCAAGCTGGCAGAAGTGGCTGGTGAGTACCTGCGCAAAGGCTCTCAAGTTTACATT
GAAGGCCAGCTTCAAACACGCAAATGGCAAGACCAATCTGGACAAGACCGCTACACAACCGAAGTTGTAGTTCAAGGCTT
TAACGGTGTGATGCAGATGCTCGGAAATCGCCAAAGCCAAAGTGCACCGCCTCAAGGCCAATCACATCAGCAGCAAGGCG
GTTGGGGGCAACCACAGCAACCACGTCAGCCACAGCAAAGCCGATTACAACAAAACCATCAGCCGCAATATAACGAGCCT
CCGATGGATTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.226

100

0.835
  ssb Glaesserella parasuis strain SC1401

54.891

100

0.594
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.471
  ssb Neisseria meningitidis MC58

44.068

100

0.459