Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   J4N39_RS08455 Genome accession   NZ_CP071848
Coordinates   1813574..1814152 (-) Length   192 a.a.
NCBI ID   WP_252018023.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808574..1819152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS08435 (J4N39_08450) - 1808894..1810147 (-) 1254 WP_252018015.1 DUF945 family protein -
  J4N39_RS08440 (J4N39_08455) - 1810328..1812277 (+) 1950 WP_252018017.1 ATP-binding protein -
  J4N39_RS08445 (J4N39_08460) - 1812288..1812785 (+) 498 WP_252018019.1 response regulator -
  J4N39_RS08450 (J4N39_08465) - 1812968..1813516 (+) 549 WP_252018021.1 hypothetical protein -
  J4N39_RS08455 (J4N39_08470) tfoX 1813574..1814152 (-) 579 WP_252018023.1 TfoX/Sxy family DNA transformation protein Regulator
  J4N39_RS08460 (J4N39_08475) - 1814602..1815525 (+) 924 WP_252018025.1 HDOD domain-containing protein -
  J4N39_RS08465 (J4N39_08480) - 1815772..1816674 (+) 903 WP_252018027.1 lysine exporter LysO family protein -
  J4N39_RS08470 (J4N39_08485) - 1816749..1817261 (+) 513 WP_252018038.1 hypothetical protein -
  J4N39_RS08475 (J4N39_08490) panP 1817371..1819011 (+) 1641 WP_252018040.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22239.65 Da        Isoelectric Point: 9.2934

>NTDB_id=548291 J4N39_RS08455 WP_252018023.1 1813574..1814152(-) (tfoX) [Vibrio sp. SCSIO 43136]
MMEQVFFEYAEQFGQYQKRSMFGGVGLFLDGAMFALITNDVIFIRGGGSLDKRLNDLGCEKYRHVKKQTTATVNYYDITE
LFESGNQELVEMIHQSIKLSIEHRAKQNAKENRRLRDLPNMQLTLERMVKKSGVEDVNAFLSLGAVDVFKRVRNTYGKEV
DIKLLWKFAGAVRGCHWKLIQEHQQQELLKSL

Nucleotide


Download         Length: 579 bp        

>NTDB_id=548291 J4N39_RS08455 WP_252018023.1 1813574..1814152(-) (tfoX) [Vibrio sp. SCSIO 43136]
ATGATGGAACAAGTGTTCTTTGAATACGCTGAACAATTTGGTCAGTATCAAAAGCGTTCAATGTTTGGTGGTGTAGGTTT
ATTTTTAGATGGTGCGATGTTTGCACTAATAACCAACGATGTGATTTTTATCCGTGGTGGTGGCAGTCTTGATAAAAGGC
TTAATGATCTAGGCTGCGAAAAGTATCGTCACGTGAAAAAACAGACGACAGCAACGGTAAATTATTACGATATTACCGAG
CTATTTGAGTCAGGTAACCAAGAATTGGTTGAGATGATTCATCAATCGATCAAACTATCGATTGAGCATAGAGCAAAGCA
AAATGCTAAAGAGAATCGTCGACTTCGAGACCTGCCAAATATGCAGTTGACGCTAGAACGCATGGTGAAGAAGTCTGGGG
TAGAGGATGTTAATGCCTTCCTTAGTCTGGGCGCTGTTGATGTGTTTAAGCGAGTGCGTAATACCTATGGCAAAGAAGTG
GATATCAAATTGCTATGGAAATTTGCAGGTGCGGTTCGTGGGTGTCACTGGAAACTTATCCAAGAACATCAGCAACAAGA
GTTGCTTAAGTCTCTATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-191)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae strain A1552

62.827

99.479

0.625
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

62.827

99.479

0.625
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

62.827

99.479

0.625
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

62.827

99.479

0.625
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

62.827

99.479

0.625
  tfoX Vibrio campbellii strain DS40M4

61.905

98.438

0.609
  tfoX Vibrio parahaemolyticus RIMD 2210633

61.376

98.438

0.604
  tfoX Aliivibrio fischeri ES114

56.545

99.479

0.563