Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   J4N41_RS13010 Genome accession   NZ_CP071845
Coordinates   2786671..2788320 (+) Length   549 a.a.
NCBI ID   WP_252035356.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43139     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2781671..2793320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N41_RS12980 (J4N41_12900) dsbC 2781980..2782732 (-) 753 WP_252035352.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
  J4N41_RS12985 (J4N41_12905) xerD 2782773..2783669 (-) 897 WP_252036648.1 site-specific tyrosine recombinase XerD -
  J4N41_RS12990 (J4N41_12910) fldB 2783833..2784354 (+) 522 WP_239865423.1 flavodoxin FldB -
  J4N41_RS12995 (J4N41_12915) ampD 2784443..2784988 (-) 546 WP_252035353.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J4N41_RS13000 (J4N41_12920) nadC 2785120..2786007 (+) 888 WP_252035354.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J4N41_RS13005 (J4N41_12925) - 2786231..2786671 (+) 441 WP_252035355.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J4N41_RS13010 (J4N41_12930) pilB 2786671..2788320 (+) 1650 WP_252035356.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J4N41_RS13015 (J4N41_12935) - 2788330..2789565 (+) 1236 WP_252035357.1 type II secretion system F family protein -
  J4N41_RS13020 (J4N41_12940) pilD 2789615..2790484 (+) 870 WP_252035358.1 A24 family peptidase Machinery gene
  J4N41_RS13025 (J4N41_12945) coaE 2790486..2791094 (+) 609 WP_252035359.1 dephospho-CoA kinase -
  J4N41_RS13030 (J4N41_12950) zapD 2791128..2791868 (+) 741 WP_252035360.1 cell division protein ZapD -
  J4N41_RS13035 (J4N41_12955) yacG 2791921..2792112 (+) 192 WP_252035361.1 DNA gyrase inhibitor YacG -
  J4N41_RS13040 (J4N41_12960) rplS 2792244..2792597 (-) 354 WP_045977783.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 61252.36 Da        Isoelectric Point: 6.6803

>NTDB_id=548254 J4N41_RS13010 WP_252035356.1 2786671..2788320(+) (pilB) [Vibrio sp. SCSIO 43139]
MMSQLPHLLQRANKITQAQALHAMAAMNTQKADACTALLTLDDISPQKLVTMISELFSLTIIQLDSFDYISCCQRLGVSD
LVCRHSALPLHIDSHQLTLAISDPSIAEIEQDFRFATGLKVKLVLCQIHILMEAIHHLYGDKFSGERFGFKAISDQELEQ
LVETTEEESADHEALYQDTSPISQYIHQVLLDAVRKRASDIHFEPYENWFRVRFRCDGLLIERQQPPHHLSNRLIARLKI
LAKLDIAERRLPQDGRITLAIASSKAIDIRVSTLPTIWGEKVVLRLLDNRKTSFDLEHLGYSPSQSEHYRRALAKPQGMI
LITGPTGSGKTLSLYSGLNILNQSEVNIATAEDPVEMHVSGINQVQIQPQIGFHFAQALRAFLRQDPDVVMVGEIRDRET
AEIAAKAAQTGHLVLSTLHTNSAAEAILRLQNLGIEPFNIAASLSLIVAQRLVRRLCPHCKRPDSEKIQEFKADPLGCSS
CHQGYSGRIGLFEILTVTPEISEAIAARAPTHHIESLAIEQGMQTLRQSGIEKLTQGVTSQTELQRVLL

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=548254 J4N41_RS13010 WP_252035356.1 2786671..2788320(+) (pilB) [Vibrio sp. SCSIO 43139]
ATGATGAGCCAATTACCTCACTTACTACAGAGAGCGAACAAAATAACTCAAGCTCAAGCCTTACATGCCATGGCGGCAAT
GAATACCCAGAAAGCGGATGCCTGTACTGCACTGCTCACTCTCGACGATATATCACCACAAAAACTGGTCACAATGATCA
GTGAACTCTTCTCCCTCACCATCATTCAGCTAGACTCATTTGATTATATCTCGTGCTGTCAGCGCCTAGGAGTTAGCGAT
TTAGTTTGCCGACATTCAGCGCTGCCCCTTCATATAGATAGTCACCAATTGACCTTAGCGATCAGTGACCCATCGATTGC
AGAAATTGAACAAGACTTTCGCTTTGCCACAGGTCTAAAAGTCAAGTTAGTACTCTGTCAGATCCATATTTTGATGGAGG
CGATACACCACTTATATGGTGATAAATTTTCAGGTGAGAGGTTTGGTTTTAAAGCAATCAGCGATCAAGAGCTTGAGCAG
CTGGTCGAGACCACTGAAGAAGAAAGTGCGGATCATGAAGCCCTCTATCAAGATACTTCACCTATTAGCCAGTACATACA
TCAAGTACTGCTAGACGCCGTGCGCAAACGTGCCTCTGATATCCATTTTGAGCCTTATGAAAACTGGTTCCGTGTTCGAT
TCAGGTGTGATGGCTTACTGATTGAAAGACAACAGCCCCCTCACCACCTATCTAATCGTTTAATTGCTCGGCTCAAAATA
TTAGCTAAGCTCGACATTGCAGAACGTCGCCTACCACAAGATGGCAGAATCACCTTAGCGATCGCATCCTCAAAGGCCAT
CGATATACGTGTCTCGACTTTACCGACCATATGGGGAGAAAAAGTCGTATTGCGGCTGCTCGATAACCGGAAAACCAGCT
TCGATTTAGAGCATTTAGGCTATAGCCCATCACAAAGTGAGCACTATCGTAGAGCGTTAGCTAAACCTCAGGGAATGATC
CTAATCACAGGCCCAACAGGCAGTGGCAAGACGTTGTCGTTATACAGTGGCCTGAATATTCTCAATCAAAGTGAAGTCAA
TATTGCGACAGCAGAGGATCCTGTTGAAATGCATGTATCGGGAATCAATCAGGTTCAAATCCAACCCCAAATTGGGTTTC
ATTTTGCTCAAGCTCTTCGAGCTTTTTTACGCCAAGATCCTGATGTTGTTATGGTCGGAGAAATACGAGACCGTGAAACA
GCGGAAATCGCAGCCAAAGCAGCGCAGACCGGGCATTTAGTGCTTTCAACTCTGCACACTAACTCGGCTGCAGAAGCCAT
TCTACGTTTACAAAACCTGGGCATCGAACCTTTCAATATCGCGGCTTCTTTAAGTCTTATCGTTGCACAAAGGTTAGTCA
GGCGTCTGTGCCCTCACTGTAAACGTCCAGACTCAGAAAAAATTCAGGAATTCAAAGCTGACCCATTAGGCTGCAGTTCA
TGCCATCAAGGTTATTCGGGACGAATCGGACTGTTTGAAATTCTTACCGTCACTCCAGAAATATCAGAAGCGATTGCTGC
CAGAGCGCCAACCCACCACATTGAAAGCTTGGCGATCGAGCAGGGGATGCAGACTCTGCGCCAATCTGGAATTGAGAAGC
TTACGCAAGGGGTAACCAGTCAAACAGAACTACAGCGGGTGCTACTCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(188-455)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(40-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio campbellii strain DS40M4

56.506

100

0.577
  pilB Vibrio parahaemolyticus RIMD 2210633

56.708

100

0.577
  pilB Vibrio cholerae strain A1552

56.071

100

0.572
  pilB Acinetobacter baumannii D1279779

45.208

100

0.455
  pilB Legionella pneumophila strain ERS1305867

44.727

100

0.448
  pilB Acinetobacter baylyi ADP1

45.131

97.268

0.439
  pilF Neisseria gonorrhoeae MS11

41.811

94.536

0.395
  pilF Thermus thermophilus HB27

41.803

88.889

0.372