Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSP17_RS14950 Genome accession   NZ_CP089062
Coordinates   3223121..3223450 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3218121..3228450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS14935 (LSP17_14935) - 3218821..3219780 (+) 960 WP_231798961.1 SDR family oxidoreductase -
  LSP17_RS14940 (LSP17_14940) - 3219777..3220802 (+) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  LSP17_RS14945 (LSP17_14945) - 3220933..3222930 (+) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  LSP17_RS14950 (LSP17_14950) comEA/comE1 3223121..3223450 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  LSP17_RS14960 (LSP17_14960) - 3223667..3224863 (-) 1197 WP_073669511.1 amino acid aminotransferase -
  LSP17_RS14965 (LSP17_14965) uvrB 3225051..3227063 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=548253 LSP17_RS14950 WP_003104586.1 3223121..3223450(+) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=548253 LSP17_RS14950 WP_003104586.1 3223121..3223450(+) (comEA/comE1) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAATTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385