Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N41_RS01725 Genome accession   NZ_CP071845
Coordinates   372972..373619 (-) Length   215 a.a.
NCBI ID   WP_239871354.1    Uniprot ID   A0A9Q8XHN3
Organism   Vibrio sp. SCSIO 43139     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 367972..378619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N41_RS01715 (J4N41_01710) uvrA 369021..371843 (-) 2823 WP_252035884.1 excinuclease ABC subunit UvrA -
  J4N41_RS01720 (J4N41_01715) galU 371980..372852 (-) 873 WP_239835103.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N41_RS01725 (J4N41_01720) qstR 372972..373619 (-) 648 WP_239871354.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N41_RS01730 (J4N41_01725) ssb 373901..374446 (+) 546 WP_239835105.1 single-stranded DNA-binding protein Machinery gene
  J4N41_RS01735 (J4N41_01730) csrD 374597..376612 (+) 2016 WP_252035885.1 RNase E specificity factor CsrD -
  J4N41_RS01740 (J4N41_01735) - 376609..378048 (+) 1440 WP_239876691.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25058.21 Da        Isoelectric Point: 9.2968

>NTDB_id=548235 J4N41_RS01725 WP_239871354.1 372972..373619(-) (qstR) [Vibrio sp. SCSIO 43139]
MAKNIYARTIYFLCEDTSKPHHLIHQVEKLLSIDIPRIEPNELMLAMQQHKHKILMIDHNNYQKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLRFGNLKALFYQEESIEAVAKGCGEVINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTAREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMMS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=548235 J4N41_RS01725 WP_239871354.1 372972..373619(-) (qstR) [Vibrio sp. SCSIO 43139]
ATGGCCAAAAACATTTACGCCCGAACTATCTACTTTCTTTGTGAAGATACATCGAAACCCCATCACCTTATCCATCAAGT
AGAAAAGCTACTCAGTATCGACATTCCACGTATTGAGCCCAATGAACTCATGCTTGCCATGCAACAACATAAACATAAGA
TCCTAATGATAGATCACAACAATTATCAAAAGCTTAACAACCAGATTCGCGACCTCCCTCTGTCGAATAAAATGTTTGAG
ACGATCATTTTTAATGTCGAGAAAAGACTGACTACAGAAGAACTATTACGTTTTGGCAACCTCAAAGCCTTATTTTACCA
AGAGGAGTCTATTGAAGCAGTCGCCAAAGGATGTGGTGAAGTCATCAACAGCCAAAACTGGCTGCCACGTAAGGTCGCCG
CTCAGCTACTGCACTATTACCGCCATGTAGTATTAAGCCAGACCGCACCCGCGACAGTAGATTTAACAGCCCGCGAGATC
CAAATTCTTCGCTGTTTAAAAACTGGCGCATCAAATATGCAGATTGCCGAAGACCTGTTTATCAGTGAGTTCACGGTGAA
GTCTCATTTATACCAAATCTTTAAAAAGCTCTCGGTCAAGAATAGAGTGCAAGCCATCGCTTGGGCCAATCAACATATGA
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

59.813

99.535

0.595
  qstR Vibrio campbellii strain DS40M4

58.525

100

0.591
  qstR Vibrio parahaemolyticus RIMD 2210633

56.744

100

0.567