Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N41_RS01730 Genome accession   NZ_CP071845
Coordinates   373901..374446 (+) Length   181 a.a.
NCBI ID   WP_239835105.1    Uniprot ID   A0A9Q8XHQ1
Organism   Vibrio sp. SCSIO 43139     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 368901..379446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N41_RS01715 (J4N41_01710) uvrA 369021..371843 (-) 2823 WP_252035884.1 excinuclease ABC subunit UvrA -
  J4N41_RS01720 (J4N41_01715) galU 371980..372852 (-) 873 WP_239835103.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N41_RS01725 (J4N41_01720) qstR 372972..373619 (-) 648 WP_239871354.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N41_RS01730 (J4N41_01725) ssb 373901..374446 (+) 546 WP_239835105.1 single-stranded DNA-binding protein Machinery gene
  J4N41_RS01735 (J4N41_01730) csrD 374597..376612 (+) 2016 WP_252035885.1 RNase E specificity factor CsrD -
  J4N41_RS01740 (J4N41_01735) - 376609..378048 (+) 1440 WP_239876691.1 MSHA biogenesis protein MshI -
  J4N41_RS01745 (J4N41_01740) gspM 378048..378698 (+) 651 WP_239871344.1 type II secretion system protein GspM -
  J4N41_RS01750 (J4N41_01745) - 378718..379014 (+) 297 WP_239835109.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20191.22 Da        Isoelectric Point: 4.9269

>NTDB_id=548236 J4N41_RS01730 WP_239835105.1 373901..374446(+) (ssb) [Vibrio sp. SCSIO 43139]
MASRGVNKVIIMGNLGQDPEVKYTANGSAVANITVATSESWRDKNTGEQREKTEWHRIVLFGKTAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQWPAGQMQLLGGRPQGGASGQPMGQPQQQGGWGQPQQPAMQQSQPAQQQYSQPQQQ
PSQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=548236 J4N41_RS01730 WP_239835105.1 373901..374446(+) (ssb) [Vibrio sp. SCSIO 43139]
ATGGCGAGCCGTGGAGTAAATAAAGTTATCATTATGGGTAACCTAGGGCAGGATCCTGAAGTTAAGTACACTGCGAACGG
TAGTGCCGTGGCGAACATTACCGTTGCAACTTCTGAATCTTGGCGAGACAAAAATACGGGCGAGCAGCGTGAAAAAACGG
AATGGCACCGTATTGTGCTCTTTGGTAAGACCGCTGAAGTCGCGGGTGAGTACCTACGTAAAGGCTCGCAAGTCTACATT
GAAGGCCAACTTCAAACGCGTAAGTGGCAAGACCAAAATGGTCAAGACCGTTACACAACTGAAGTCGTTGTTCAATGGCC
AGCTGGTCAAATGCAATTGCTTGGTGGTCGTCCGCAGGGGGGAGCATCAGGTCAGCCAATGGGTCAACCTCAGCAGCAAG
GTGGTTGGGGACAGCCTCAACAGCCAGCGATGCAGCAAAGCCAACCTGCTCAGCAGCAATACTCTCAGCCGCAACAGCAG
CCGAGTCAAAGCCAGCCACAATACAATGAACCTCCAATGGATTTTGATGACGATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.956

100

0.768
  ssb Glaesserella parasuis strain SC1401

52.041

100

0.564
  ssb Neisseria meningitidis MC58

45.902

100

0.464
  ssb Neisseria gonorrhoeae MS11

45.902

100

0.464