Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LSP17_RS07745 Genome accession   NZ_CP089062
Coordinates   1674357..1674722 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1669357..1679722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS07715 (LSP17_07715) pyrR 1669979..1670491 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LSP17_RS07720 (LSP17_07720) ruvX 1670603..1671037 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  LSP17_RS07725 (LSP17_07725) - 1671037..1671606 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  LSP17_RS07730 (LSP17_07730) - 1671655..1672548 (-) 894 WP_003162015.1 energy transducer TonB -
  LSP17_RS07735 (LSP17_07735) gshB 1672695..1673648 (-) 954 WP_003100943.1 glutathione synthase -
  LSP17_RS07740 (LSP17_07740) pilG 1673903..1674310 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LSP17_RS07745 (LSP17_07745) pilH 1674357..1674722 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LSP17_RS07750 (LSP17_07750) - 1674773..1675309 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LSP17_RS07755 (LSP17_07755) pilJ 1675394..1677442 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  LSP17_RS07760 (LSP17_07760) pilK 1677503..1678378 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=548236 LSP17_RS07745 WP_003084587.1 1674357..1674722(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=548236 LSP17_RS07745 WP_003084587.1 1674357..1674722(+) (pilH) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364