Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PSE7367_RS05750 Genome accession   NC_019701
Coordinates   1484519..1484887 (-) Length   122 a.a.
NCBI ID   WP_015164434.1    Uniprot ID   K9SHL4
Organism   Pseudanabaena sp. PCC 7367     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479519..1489887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS05735 (Pse7367_1161) - 1480083..1482587 (-) 2505 WP_015164431.1 methyl-accepting chemotaxis protein -
  PSE7367_RS05740 (Pse7367_1162) - 1482651..1483181 (-) 531 WP_015164432.1 chemotaxis protein CheW -
  PSE7367_RS05745 (Pse7367_1163) pilH 1483777..1484145 (-) 369 WP_015164433.1 response regulator transcription factor Machinery gene
  PSE7367_RS05750 (Pse7367_1164) pilH 1484519..1484887 (-) 369 WP_015164434.1 response regulator transcription factor Machinery gene
  PSE7367_RS05755 (Pse7367_1165) - 1484942..1486102 (-) 1161 WP_015164435.1 response regulator -
  PSE7367_RS05765 (Pse7367_1166) - 1486765..1487490 (+) 726 WP_015164436.1 ribonuclease HII -
  PSE7367_RS05770 (Pse7367_1167) trxA 1487787..1488104 (-) 318 WP_015164437.1 thioredoxin -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13598.78 Da        Isoelectric Point: 4.9006

>NTDB_id=54817 PSE7367_RS05750 WP_015164434.1 1484519..1484887(-) (pilH) [Pseudanabaena sp. PCC 7367]
MNKVLVVEDSPPQREMITALLRDSGLSVSAAIDGVEALEQISGSCPDLVVLDIVMPRMNGYELCRRLKTDPKTQEVPVVM
CSTKGEEFDRYWGMRQGADAYIAKPFQPQELVGTVKQLLRKT

Nucleotide


Download         Length: 369 bp        

>NTDB_id=54817 PSE7367_RS05750 WP_015164434.1 1484519..1484887(-) (pilH) [Pseudanabaena sp. PCC 7367]
ATGAATAAAGTTTTGGTTGTTGAGGATAGCCCCCCGCAACGGGAAATGATAACGGCTTTACTTAGAGATAGCGGTTTAAG
TGTGAGTGCAGCGATCGATGGGGTTGAAGCCCTAGAGCAAATATCGGGGAGCTGCCCTGACTTGGTAGTGCTCGATATTG
TGATGCCGCGCATGAATGGCTATGAGTTATGCCGCCGCCTCAAAACTGATCCCAAGACCCAGGAAGTGCCGGTGGTAATG
TGCTCGACTAAGGGCGAAGAATTCGATCGCTATTGGGGGATGCGCCAAGGTGCTGATGCATATATTGCTAAGCCATTTCA
ACCCCAAGAGCTGGTGGGCACGGTCAAACAACTCCTGCGCAAAACCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SHL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.38

99.18

0.738
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393
  vicR Streptococcus mutans UA159

38.525

100

0.385
  pilG Acinetobacter baumannii strain A118

40

94.262

0.377

Multiple sequence alignment