Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J4N40_RS01830 Genome accession   NZ_CP071840
Coordinates   379786..380379 (+) Length   197 a.a.
NCBI ID   WP_033907305.1    Uniprot ID   A0AAW9B9Y8
Organism   Vibrio sp. SCSIO 43097     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374786..385379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS01815 (J4N40_01815) - 375512..378073 (-) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -
  J4N40_RS01820 (J4N40_01820) pilM 378218..379234 (+) 1017 WP_017821733.1 type IV pilus assembly protein PilM Machinery gene
  J4N40_RS01825 (J4N40_01825) pilN 379218..379793 (+) 576 WP_054577259.1 PilN domain-containing protein Machinery gene
  J4N40_RS01830 (J4N40_01830) pilO 379786..380379 (+) 594 WP_033907305.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4N40_RS01835 (J4N40_01835) pilP 380369..380884 (+) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  J4N40_RS01840 (J4N40_01840) pilQ 380910..382655 (+) 1746 WP_033907306.1 type IV pilus secretin PilQ family protein Machinery gene
  J4N40_RS01845 (J4N40_01845) aroK 382843..383361 (+) 519 WP_005381319.1 shikimate kinase AroK -
  J4N40_RS01850 (J4N40_01850) aroB 383394..384494 (+) 1101 WP_005381318.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23001.51 Da        Isoelectric Point: 5.0948

>NTDB_id=548146 J4N40_RS01830 WP_033907305.1 379786..380379(+) (pilO) [Vibrio sp. SCSIO 43097]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKEEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=548146 J4N40_RS01830 WP_033907305.1 379786..380379(+) (pilO) [Vibrio sp. SCSIO 43097]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCGCTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGAAGAACAGTTGAATCACTTGATCCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTTC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCGATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGTGAAACCCTGCACTTTCGGGTGCGCGCTAACACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

87.895

96.447

0.848
  pilO Vibrio cholerae strain A1552

70.681

96.954

0.685