Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J4N40_RS01835 Genome accession   NZ_CP071840
Coordinates   380369..380884 (+) Length   171 a.a.
NCBI ID   WP_005382766.1    Uniprot ID   A0A2I3CBC3
Organism   Vibrio sp. SCSIO 43097     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375369..385884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS01815 (J4N40_01815) - 375512..378073 (-) 2562 WP_025768081.1 PBP1A family penicillin-binding protein -
  J4N40_RS01820 (J4N40_01820) pilM 378218..379234 (+) 1017 WP_017821733.1 type IV pilus assembly protein PilM Machinery gene
  J4N40_RS01825 (J4N40_01825) pilN 379218..379793 (+) 576 WP_054577259.1 PilN domain-containing protein Machinery gene
  J4N40_RS01830 (J4N40_01830) pilO 379786..380379 (+) 594 WP_033907305.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4N40_RS01835 (J4N40_01835) pilP 380369..380884 (+) 516 WP_005382766.1 pilus assembly protein PilP Machinery gene
  J4N40_RS01840 (J4N40_01840) pilQ 380910..382655 (+) 1746 WP_033907306.1 type IV pilus secretin PilQ family protein Machinery gene
  J4N40_RS01845 (J4N40_01845) aroK 382843..383361 (+) 519 WP_005381319.1 shikimate kinase AroK -
  J4N40_RS01850 (J4N40_01850) aroB 383394..384494 (+) 1101 WP_005381318.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19065.24 Da        Isoelectric Point: 10.4342

>NTDB_id=548147 J4N40_RS01835 WP_005382766.1 380369..380884(+) (pilP) [Vibrio sp. SCSIO 43097]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=548147 J4N40_RS01835 WP_005382766.1 380369..380884(+) (pilP) [Vibrio sp. SCSIO 43097]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGTTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACTATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGTAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTTGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTACTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.977

100

0.573