Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4G50_RS02225 Genome accession   NZ_CP071825
Coordinates   467190..467744 (+) Length   184 a.a.
NCBI ID   WP_207997900.1    Uniprot ID   -
Organism   Burkholderia anthina strain 1CH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 462190..472744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G50_RS02215 (J4G50_02215) uvrA 462748..465633 (-) 2886 WP_096507349.1 excinuclease ABC subunit UvrA -
  J4G50_RS02220 (J4G50_02220) - 465896..467086 (+) 1191 WP_096507348.1 MFS transporter -
  J4G50_RS02225 (J4G50_02225) ssb 467190..467744 (+) 555 WP_207997900.1 single-stranded DNA-binding protein Machinery gene
  J4G50_RS02230 (J4G50_02230) mug 467859..468410 (+) 552 WP_207997901.1 G/U mismatch-specific DNA glycosylase -
  J4G50_RS02235 (J4G50_02235) - 468397..469020 (+) 624 WP_207997902.1 DNA-3-methyladenine glycosylase -
  J4G50_RS02240 (J4G50_02240) - 469092..469856 (+) 765 WP_207997903.1 ParA family protein -
  J4G50_RS02245 (J4G50_02245) phaP 470313..470894 (+) 582 WP_207997904.1 TIGR01841 family phasin -
  J4G50_RS02250 (J4G50_02250) - 471156..472337 (+) 1182 WP_115531474.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18828.64 Da        Isoelectric Point: 5.3400

>NTDB_id=548117 J4G50_RS02225 WP_207997900.1 467190..467744(+) (ssb) [Burkholderia anthina strain 1CH1]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGAGGGGGGGDEGGYGGGYSGGGGGRGGEQMERGGGGGGRAGGAPRGGA
GGGQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=548117 J4G50_RS02225 WP_207997900.1 467190..467744(+) (ssb) [Burkholderia anthina strain 1CH1]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATTCGTCTCGCAACGACCGATCGCTATAAAGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTCGCGTTTTTCGGCCGTCTCGCCGAAATCGTCAGCGAGTACCTGAAGAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCGGATCAAATGCAGAT
GCTCGGCGGCCGCGGCGGTGCGGGCGGCGGTGGTGGCGGCGGTGACGAAGGCGGTTACGGCGGCGGCTATAGTGGTGGCG
GCGGCGGTCGCGGCGGCGAACAGATGGAACGCGGCGGCGGTGGCGGTGGTCGTGCCGGCGGCGCGCCGCGCGGCGGTGCA
GGCGGCGGCCAGAGCCGTCCGAGCGCGCCGGCAGGCGGCGGCTTCGACGAGATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.454

100

0.511
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.462
  ssb Neisseria meningitidis MC58

43.956

98.913

0.435
  ssb Neisseria gonorrhoeae MS11

43.956

98.913

0.435