Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LSP19_RS06730 Genome accession   NZ_CP089061
Coordinates   1458590..1460032 (-) Length   480 a.a.
NCBI ID   WP_023086624.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF41     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453590..1465032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP19_RS06700 (LSP19_06700) - 1453916..1455031 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  LSP19_RS06705 (LSP19_06705) - 1455024..1455785 (+) 762 WP_003101179.1 DUF2334 domain-containing protein -
  LSP19_RS06710 (LSP19_06710) - 1455782..1456783 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LSP19_RS06715 (LSP19_06715) - 1456758..1456970 (-) 213 WP_003101176.1 hypothetical protein -
  LSP19_RS06720 (LSP19_06720) purU 1457020..1457871 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  LSP19_RS06725 (LSP19_06725) mvaT 1458131..1458505 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  LSP19_RS06730 (LSP19_06730) sbcB 1458590..1460032 (-) 1443 WP_023086624.1 exodeoxyribonuclease I Machinery gene
  LSP19_RS06735 (LSP19_06735) - 1460257..1460994 (+) 738 WP_003101171.1 hypothetical protein -
  LSP19_RS06740 (LSP19_06740) - 1461032..1461829 (+) 798 WP_003123273.1 RDD family protein -
  LSP19_RS06745 (LSP19_06745) - 1461826..1462806 (+) 981 WP_003093893.1 stage II sporulation protein M -
  LSP19_RS06750 (LSP19_06750) - 1462793..1464364 (+) 1572 WP_031673007.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55475.79 Da        Isoelectric Point: 5.5542

>NTDB_id=548117 LSP19_RS06730 WP_023086624.1 1458590..1460032(-) (sbcB) [Pseudomonas aeruginosa strain UNC_PaerCF41]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFAASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=548117 LSP19_RS06730 WP_023086624.1 1458590..1460032(-) (sbcB) [Pseudomonas aeruginosa strain UNC_PaerCF41]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCGCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44