Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PSE7367_RS02235 Genome accession   NC_019701
Coordinates   569988..570362 (+) Length   124 a.a.
NCBI ID   WP_015163737.1    Uniprot ID   K9SF18
Organism   Pseudanabaena sp. PCC 7367     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564988..575362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS02225 (Pse7367_0450) ileS 565142..568024 (-) 2883 WP_015163735.1 isoleucine--tRNA ligase -
  PSE7367_RS02230 (Pse7367_0451) - 568248..569309 (-) 1062 WP_015163736.1 ATP-binding cassette domain-containing protein -
  PSE7367_RS02235 (Pse7367_0452) pilH 569988..570362 (+) 375 WP_015163737.1 response regulator transcription factor Machinery gene
  PSE7367_RS02240 (Pse7367_0453) bioF 570449..571618 (-) 1170 WP_015163738.1 8-amino-7-oxononanoate synthase -
  PSE7367_RS02245 (Pse7367_0454) rpoB 571850..575149 (+) 3300 WP_015163739.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13905.08 Da        Isoelectric Point: 4.6722

>NTDB_id=54811 PSE7367_RS02235 WP_015163737.1 569988..570362(+) (pilH) [Pseudanabaena sp. PCC 7367]
MAIVLIVDDSPTARQMAAEQLKLQGYTTIEARDGKEGIERVQSLIPDIVITDIVMPNMNGYEFCRWIKTNESTKDVPTIM
CSTKDQDFDKYWGLKQGADAYLIKPYSPAELIMTVRKLLSGVAS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=54811 PSE7367_RS02235 WP_015163737.1 569988..570362(+) (pilH) [Pseudanabaena sp. PCC 7367]
ATGGCTATAGTCCTGATTGTGGATGATAGTCCCACGGCGCGACAAATGGCGGCTGAGCAATTAAAGTTGCAAGGCTATAC
CACCATTGAAGCAAGGGACGGAAAAGAGGGGATTGAAAGGGTGCAGAGCTTGATCCCAGATATTGTGATCACCGATATTG
TGATGCCCAATATGAATGGCTATGAGTTTTGTCGCTGGATTAAGACCAACGAAAGCACCAAAGATGTGCCCACAATCATG
TGTAGCACAAAGGATCAGGATTTTGATAAATACTGGGGGCTAAAGCAGGGTGCTGATGCCTATTTGATTAAGCCCTATTC
TCCGGCGGAGTTAATCATGACTGTGCGCAAGCTCCTCAGTGGGGTTGCTAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SF18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

51.261

95.968

0.492
  pilG Acinetobacter baumannii strain A118

39.831

95.161

0.379
  vicR Streptococcus mutans UA159

38.655

95.968

0.371
  micA Streptococcus pneumoniae Cp1015

37.815

95.968

0.363

Multiple sequence alignment