Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CHRO_RS00600 Genome accession   NC_019695
Coordinates   151995..152369 (-) Length   124 a.a.
NCBI ID   WP_041462305.1    Uniprot ID   A0AB37UN41
Organism   Chroococcidiopsis thermalis PCC 7203     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146995..157369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHRO_RS00590 (Chro_0120) - 149098..151434 (-) 2337 WP_015152228.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  CHRO_RS00595 (Chro_0121) - 151459..151989 (-) 531 WP_015152229.1 chemotaxis protein CheW -
  CHRO_RS00600 (Chro_0122) pilH 151995..152369 (-) 375 WP_041462305.1 response regulator Machinery gene
  CHRO_RS00605 (Chro_0123) - 152997..154208 (-) 1212 WP_015152231.1 response regulator -
  CHRO_RS00610 (Chro_0124) hmpF 154575..156161 (+) 1587 WP_015152232.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13801.11 Da        Isoelectric Point: 4.8604

>NTDB_id=54790 CHRO_RS00600 WP_041462305.1 151995..152369(-) (pilH) [Chroococcidiopsis thermalis PCC 7203]
MSTVLVVEDSPTQREIIIDLLQGSGLTVMIATDGMEALQHMQEASCPDLVVLDIVMPRMNGYEVCRKLKTDPKTQNVPVV
MCSSKGEEFDRYWGMKQGADAYIVKPFQPKELLATVKQLLRGQG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=54790 CHRO_RS00600 WP_041462305.1 151995..152369(-) (pilH) [Chroococcidiopsis thermalis PCC 7203]
ATGAGTACAGTGCTGGTCGTGGAAGATAGTCCTACTCAAAGAGAGATTATTATCGATCTTCTTCAGGGGAGTGGGTTGAC
GGTGATGATAGCCACTGATGGTATGGAGGCTTTACAGCATATGCAAGAAGCTTCTTGTCCCGATTTAGTGGTGTTAGATA
TTGTCATGCCTAGAATGAATGGTTACGAGGTTTGTCGCAAGCTGAAAACCGATCCAAAAACTCAAAATGTCCCAGTGGTA
ATGTGTTCCTCCAAAGGCGAGGAATTCGATCGCTACTGGGGAATGAAACAGGGTGCAGACGCTTACATTGTCAAACCATT
TCAACCAAAAGAATTACTGGCAACAGTTAAACAATTACTGCGAGGGCAAGGGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70.492

98.387

0.694
  pilG Acinetobacter baumannii strain A118

44.348

92.742

0.411
  vicR Streptococcus mutans UA159

40.496

97.581

0.395
  micA Streptococcus pneumoniae Cp1015

40.496

97.581

0.395

Multiple sequence alignment