Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1M35_RS01670 Genome accession   NZ_CP071796
Coordinates   356944..357459 (+) Length   171 a.a.
NCBI ID   WP_208009408.1    Uniprot ID   A0A975H3U5
Organism   Ottowia testudinis strain 27C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 351944..362459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1M35_RS01645 (J1M35_01645) - 352557..353138 (-) 582 WP_208009404.1 IS630 family transposase -
  J1M35_RS01650 (J1M35_01650) - 353062..353409 (-) 348 WP_208009405.1 IS630 transposase-related protein -
  J1M35_RS01655 (J1M35_01655) - 353524..354048 (-) 525 WP_208009406.1 ecotin family protein -
  J1M35_RS01660 (J1M35_01660) - 354350..355534 (+) 1185 WP_208009407.1 MFS transporter -
  J1M35_RS01665 (J1M35_01665) - 355416..356903 (-) 1488 WP_347880304.1 chloride channel protein -
  J1M35_RS01670 (J1M35_01670) ssb 356944..357459 (+) 516 WP_208009408.1 single-stranded DNA-binding protein Machinery gene
  J1M35_RS01675 (J1M35_01675) - 357671..358552 (+) 882 WP_208009409.1 methyltransferase domain-containing protein -
  J1M35_RS01680 (J1M35_01680) speB 358561..359514 (-) 954 WP_208009410.1 agmatinase -
  J1M35_RS01685 (J1M35_01685) - 359525..360343 (-) 819 WP_208009411.1 ABC transporter permease -
  J1M35_RS01690 (J1M35_01690) - 360425..361672 (-) 1248 WP_208009412.1 ABC transporter permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18462.44 Da        Isoelectric Point: 6.4844

>NTDB_id=547800 J1M35_RS01670 WP_208009408.1 356944..357459(+) (ssb) [Ottowia testudinis strain 27C]
MASVNKVILVGNLGRDPEMRTFPSGDQVANVTLATTDKWKDKQSGEPREHTEWHRLVFNGRLAEIAGQYLRKGSQIYVEG
SIRTRKWQDQATGQDRYATEVRVDQMQMLGSRQGMGGPSDDGGGYGGGDGGGYDAPRRAAPAPRAAPAPRAPAPAAKPSS
GFDDMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=547800 J1M35_RS01670 WP_208009408.1 356944..357459(+) (ssb) [Ottowia testudinis strain 27C]
ATGGCCTCCGTCAACAAAGTCATCCTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGCACCTTTCCCAGCGGCGACCA
GGTCGCCAACGTGACCCTGGCCACCACCGACAAGTGGAAAGACAAGCAAAGCGGCGAGCCGCGCGAGCACACCGAATGGC
ACCGCCTGGTGTTCAACGGCCGCCTGGCAGAGATCGCCGGCCAGTACCTGCGCAAGGGCAGCCAGATCTACGTCGAAGGC
AGCATCCGCACGCGCAAGTGGCAAGACCAGGCCACCGGCCAGGACCGCTACGCCACCGAAGTCCGCGTCGACCAGATGCA
GATGCTGGGCAGCCGGCAGGGCATGGGCGGGCCGTCGGACGATGGTGGTGGCTACGGCGGCGGCGATGGCGGCGGCTACG
ACGCGCCGCGCCGCGCCGCGCCCGCCCCGCGCGCGGCTCCGGCGCCCCGTGCACCGGCGCCTGCCGCCAAGCCGTCGTCG
GGCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.262

100

0.561
  ssb Vibrio cholerae strain A1552

52.222

100

0.55
  ssb Neisseria meningitidis MC58

44.505

100

0.474
  ssb Neisseria gonorrhoeae MS11

43.956

100

0.468